Non-Coding RNA Search

Ss1.1-rhlv26b_j2.5

Sequence:


               
               CCCACAGGCGGGCCCACACCGCCAACCCACTGCATCGCTGCCGCTGCGGCAAAACATTTA
GCAACATGACCAAGTTCCTCTACCACCGACGCACTCACGCTGGCAAGAGTGGGGCACCTC
CCGGGGCAGCGGCAGCAGCGGTGACCTCCCCAGCTCCAGCTGAGCCCAGCCCCCTGCCCC
CACCCCCTGCTCCACCCGCCCAGCTGCCCTGCCCACAGTGCTCCATGTCCTTCGCAACGG
CCTCCCGGCTCTCTCGACACCGGCGCGCGGTCCACGGGCCACCGGAGCGACGGCACCGCT
GTGGCGTTTGCGGTAAGGGCTTCAAGAAGCTGGTCCATGTGCGCAACCACCTGCGGACAC
ACACAGGCGAGAGGCCCTTCCAGTGCCACTCCTGTGGCAAGACTTTTGCTTCCCTGGCCA
ACCTCAGCCGCCACCAACTGACCCACACGGGCGTGCGTCCCTACCAGTGCCTGGACTGTG
GCAAGCGCTTCACACAGAGCTCCAACCTGCAGCAGCACCGGAGGCTGCACCTGCGGCCCG
TCGCCTTTGCCCGTGCGCCCCGCCTCCCCATCACCGGTCTCTACAACAAGAGCCCCTACT
ACTGCGGGACCTGCGGCCGCTGGTTCCGTGCCATGGCAGGCCTGCGACTGCATCAGCGGG
TCCATGCCCAGGCCCGGACGGTGACACTGCAGCCTCCCAGATCACCTCCTCCTGCCCCAC
CCCCACCCCCCGAGCCTCAGCAGACTATCATGTGCACGGAGCTCGGGGAAACCATCGCCA
TCATCGAGACATCCCAGCCTCTGGCTCTTGTGGACACACTGCAGCTGTGCCAGGCAGCAC
TGGGGGCCACTGAAGCGAGTGGGCTCTTGCAGTTGGACACGGCCTTTGTGTGACACAGCT
GAAGAGCAACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACAGGCGGGCCCACACCGCCAACCCACTGCATCGCTGCCGCTGCGGCAAAACATTTA
GCAACATGACCAAGTTCCTCTACCACCGACGCACTCACGCTGGCAAGAGTGGGGCACCTC
CCGGGGCAGCGGCAGCAGCGGTGACCTCCCCAGCTCCAGCTGAGCCCAGCCCCCTGCCCC
CACCCCCTGCTCCACCCGCCCAGCTGCCCTGCCCACAGTGCTCCATGTCCTTCGCAACGG
CCTCCCGGCTCTCTCGACACCGGCGCGCGGTCCACGGGCCACCGGAGCGACGGCACCGCT
GTGGCGTTTGCGGTAAGGGCTTCAAGAAGCTGGTCCATGTGCGCAACCACCTGCGGACAC
ACACAGGCGAGAGGCCCTTCCAGTGCCACTCCTGTGGCAAGACTTTTGCTTCCCTGGCCA
ACCTCAGCCGCCACCAACTGACCCACACGGGCGTGCGTCCCTACCAGTGCCTGGACTGTG
GCAAGCGCTTCACACAGAGCTCCAACCTGCAGCAGCACCGGAGGCTGCACCTGCGGCCCG
TCGCCTTTGCCCGTGCGCCCCGCCTCCCCATCACCGGTCTCTACAACAAGAGCCCCTACT
ACTGCGGGACCTGCGGCCGCTGGTTCCGTGCCATGGCAGGCCTGCGACTGCATCAGCGGG
TCCATGCCCAGGCCCGGACGGTGACACTGCAGCCTCCCAGATCACCTCCTCCTGCCCCAC
CCCCACCCCCCGAGCCTCAGCAGACTATCATGTGCACGGAGCTCGGGGAAACCATCGCCA
TCATCGAGACATCCCAGCCTCTGGCTCTTGTGGACACACTGCAGCTGTGCCAGGCAGCAC
TGGGGGCCACTGAAGCGAGTGGGCTCTTGCAGTTGGACACGGCCTTTGTGTGACACAGCT
GAAGAGCAACAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50949537|emb|CAH10586.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50949537|emb|CAH10586.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               305-464, - strand, RNAz p=0.911337

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-464, - strand, RNAz p=0.911337

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-912, gnl|bosTau2|chr18 (44944076-44945002)
               

               
               1-912, gnl|Hg17|chr19 (47421525-47422427)
               

               
               1-912, gnl|Mm7|chr7 (22014508-22015404)
               


               
               309-547, gnl|bosTau2|chr14 (680501-680739)
               

               
               309-547, gnl|Hg17|chr8 (144803903-144804141)
               

               
               309-547, gnl|Mm7|chr11 (70853463-70853701)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr18 (44944076-44945002)
               

               
               1-912, gnl|Hg17|chr19 (47421525-47422427)
               

               
               1-912, gnl|Mm7|chr7 (22014508-22015404)
               


               
               309-547, gnl|bosTau2|chr14 (680501-680739)
               

               
               309-547, gnl|Hg17|chr8 (144803903-144804141)
               

               
               309-547, gnl|Mm7|chr11 (70853463-70853701)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	1-912, gnl\|bosTau2\|chr18 (44944076-44945002)
	1-912, gnl\|Hg17\|chr19 (47421525-47422427)
	1-912, gnl\|Mm7\|chr7 (22014508-22015404)

	309-547, gnl\|bosTau2\|chr14 (680501-680739)
	309-547, gnl\|Hg17\|chr8 (144803903-144804141)
	309-547, gnl\|Mm7\|chr11 (70853463-70853701)