Ss1.1-rhlv27b_i22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTAAGTAGCAGCGCCCGGCGAAGACACAAGGACATCGCGTCCAGAAGCCATGCCTTTCT TTGATGTGCAGAAAAGGCTAGGCCTTGACTTAGACCGCTGGATGACAATCCAGAGTGCTG AGCAGCCTCACAAGATTCCAGGTCGATGCCACGCATTTGAAAAAGAATGGATAGAGTGTG CACATGGAATCGGTGGTATCCGTGCAGAGAAGGAGTGCAAGATAGAATTTGATGATTTTG TAGAGTGTCTACTTCGGCAGAAAACGATGAAACGTCTGAGTGCCATCAAGAGGCAGCGGG ATAAGCTAATAAAGGAAGGGAAGTACACACCTCCACCTCATCACTTGGGCAAGGAGGATC CTCGGCCCTGAGCAGAGCAGCTGCCCGTGGCTGGAGGCTGATTTTCACCATCCCTCTTCC CTGCTGGAAAGTTTGCATACTGAAAAGCCCCTTTGCGAAGGTATCTAAAAATAAAGGATT GCTCCGTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTAAGTAGCAGCGCCCGGCGAAGACACAAGGACATCGCGTCCAGAAGCCATGCCTTTCT TTGATGTGCAGAAAAGGCTAGGCCTTGACTTAGACCGCTGGATGACAATCCAGAGTGCTG AGCAGCCTCACAAGATTCCAGGTCGATGCCACGCATTTGAAAAAGAATGGATAGAGTGTG CACATGGAATCGGTGGTATCCGTGCAGAGAAGGAGTGCAAGATAGAATTTGATGATTTTG TAGAGTGTCTACTTCGGCAGAAAACGATGAAACGTCTGAGTGCCATCAAGAGGCAGCGGG ATAAGCTAATAAAGGAAGGGAAGTACACACCTCCACCTCATCACTTGGGCAAGGAGGATC CTCGGCCCTGAGCAGAGCAGCTGCCCGTGGCTGGAGGCTGATTTTCACCATCCCTCTTCC CTGCTGGAAAGTTTGCATACTGAAAAGCCCCTTTGCGAAGGTATCTAAAAATAAAGGATT GCTCCGTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 47-270, gnl|bosTau2|chr3 (73508576-73508799) | |
| 47-270, gnl|canFam2|chr15 (6751049-6750827) | |
| 47-270, gnl|canFam2|chr15 (6751073-6750822) | |
| 47-270, gnl|danRer3|chr19 (68037406-68037150) | |
| 47-270, gnl|dasNov1|scaffold_113622 (2315-2093) | |
| 47-270, gnl|dasNov1|scaffold_113622 (2316-2099) | |
| 47-270, gnl|echTel1|scaffold_317278 (9914-9708) | |
| 47-270, gnl|echTel1|scaffold_317278 (9916-9705) | |
| 47-270, gnl|fr1|chrUn (300348332-300348067) | |
| 47-270, gnl|hg17|chr1 (39163457-39163717) | |
| 47-270, gnl|Hg17|chr1 (39163486-39163709) | |
| 47-270, gnl|hg17|chr8 (68923833-68924046) | |
| 47-270, gnl|loxAfr1|scaffold_141150 (767-545) | |
| 47-270, gnl|loxAfr1|scaffold_141150 (793-539) | |
| 47-270, gnl|mm7|chr16 (42718924-42719146) | |
| 47-270, gnl|mm7|chr4 (123160750-123160500) | |
| 47-270, gnl|Mm7|chr4 (123160729-123160506) | |
| 47-270, gnl|monDom2|scaffold_2 (135121737-135121516) | |
| 47-270, gnl|monDom2|scaffold_43 (10180567-10180311) | |
| 47-270, gnl|panTro1|chr1 (40029516-40029776) | |
| 47-270, gnl|panTro1|chr7 (70965130-70965343) | |
| 47-270, gnl|rheMac2|chr1 (41895578-41895838) | |
| 47-270, gnl|rheMac2|chr8 (70462302-70462514) | |
| 47-270, gnl|rn3|chr2 (189628194-189628416) | |
| 47-270, gnl|rn3|chr5 (143030818-143030568) | |
| 47-270, gnl|tetNig1|chrUn_random (3415858-3415613) | |
| 47-270, gnl|xenTro1|scaffold_1043 (244627-244367) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-270, gnl|bosTau2|chr3 (73508576-73508799) | |
| 47-270, gnl|canFam2|chr15 (6751049-6750827) | |
| 47-270, gnl|canFam2|chr15 (6751073-6750822) | |
| 47-270, gnl|danRer3|chr19 (68037406-68037150) | |
| 47-270, gnl|dasNov1|scaffold_113622 (2315-2093) | |
| 47-270, gnl|dasNov1|scaffold_113622 (2316-2099) | |
| 47-270, gnl|echTel1|scaffold_317278 (9914-9708) | |
| 47-270, gnl|echTel1|scaffold_317278 (9916-9705) | |
| 47-270, gnl|fr1|chrUn (300348332-300348067) | |
| 47-270, gnl|hg17|chr1 (39163457-39163717) | |
| 47-270, gnl|Hg17|chr1 (39163486-39163709) | |
| 47-270, gnl|hg17|chr8 (68923833-68924046) | |
| 47-270, gnl|loxAfr1|scaffold_141150 (767-545) | |
| 47-270, gnl|loxAfr1|scaffold_141150 (793-539) | |
| 47-270, gnl|mm7|chr16 (42718924-42719146) | |
| 47-270, gnl|mm7|chr4 (123160750-123160500) | |
| 47-270, gnl|Mm7|chr4 (123160729-123160506) | |
| 47-270, gnl|monDom2|scaffold_2 (135121737-135121516) | |
| 47-270, gnl|monDom2|scaffold_43 (10180567-10180311) | |
| 47-270, gnl|panTro1|chr1 (40029516-40029776) | |
| 47-270, gnl|panTro1|chr7 (70965130-70965343) | |
| 47-270, gnl|rheMac2|chr1 (41895578-41895838) | |
| 47-270, gnl|rheMac2|chr8 (70462302-70462514) | |
| 47-270, gnl|rn3|chr2 (189628194-189628416) | |
| 47-270, gnl|rn3|chr5 (143030818-143030568) | |
| 47-270, gnl|tetNig1|chrUn_random (3415858-3415613) | |
| 47-270, gnl|xenTro1|scaffold_1043 (244627-244367) |
| Expressed library(ies): 62 entry(ies) | More info |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
| che (2.31734) | |
| nms (1.71086) | |
| cje (1.65235) | |
| cst (1.5404) | |
| cki (1.48711) | |
| cbe (1.43541) | |
| hlv (1.11405) | |
| fce (1.08637) | |
| nje (0.8296) | |
| cmu (0.745573) | |
| pty (0.713572) | |
| mcp (0.682594) | |
| ssp (0.677599) | |
| mga (0.64082) | |
| sme (0.610874) | |
| aor (0.585823) | |
| cte (0.58548) | |
| hyp (0.571347) | |
| sag (0.548145) | |
| ton (0.526501) | |
| fco (0.471624) | |
| ecc (0.46014) | |
| ece (0.45861) | |
| jca (0.45584) | |
| csk (0.422238) | |
| mas (0.42061) | |
| hea (0.408998) | |
| cov (0.396458) | |
| eje (0.395335) | |
| nlu (0.383362) | |
| sto (0.359648) | |
| rec (0.346141) | |
| duo (0.345602) | |
| spc (0.340097) | |
| cli (0.305623) | |
| cag (0.302389) | |
| isp (0.300752) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| bla (0.248694) | |
| eru (0.240096) | |
| med (0.232504) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| eli (0.151814) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (2.31734) | |
| nms (1.71086) | |
| cje (1.65235) | |
| cst (1.5404) | |
| cki (1.48711) | |
| cbe (1.43541) | |
| hlv (1.11405) | |
| fce (1.08637) | |
| nje (0.8296) | |
| cmu (0.745573) | |
| pty (0.713572) | |
| mcp (0.682594) | |
| ssp (0.677599) | |
| mga (0.64082) | |
| sme (0.610874) | |
| aor (0.585823) | |
| cte (0.58548) | |
| hyp (0.571347) | |
| sag (0.548145) | |
| ton (0.526501) | |
| fco (0.471624) | |
| ecc (0.46014) | |
| ece (0.45861) | |
| jca (0.45584) | |
| csk (0.422238) | |
| mas (0.42061) | |
| hea (0.408998) | |
| cov (0.396458) | |
| eje (0.395335) | |
| nlu (0.383362) | |
| sto (0.359648) | |
| rec (0.346141) | |
| duo (0.345602) | |
| spc (0.340097) | |
| cli (0.305623) | |
| cag (0.302389) | |
| isp (0.300752) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| bla (0.248694) | |
| eru (0.240096) | |
| med (0.232504) | |
| mgp (0.230681) | |
| fli (0.202881) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| sin (0.174948) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| eli (0.151814) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) |