Non-Coding RNA Search

Ss1.1-rhlv27b_j19.5

Sequence:


               
               TTCCTGTCACCTTGATCCTAAGATGCCTTCCAGTTTCAGAGATGTTAAAGTGCGTCTTAG
AAAGAATGAAAAAGAATGAAAGGCGCCTGGGTTAACGTGGACCTCTTCCTCCTTAGGTGG
GTAAAGCGCTAGGCCAGCGTTCCACAGAAACACAGGGGCACACTGCCATTCTGACCTTAA
TTCTTCGAAATGTCAAATATTGAGGCTGGTAAGGGGATATCTGGAGGCAAATAGCATTAT
TAGGCGCTTTAAAATTACTTCAGTCCTAAGACCGTGACAGTTTGTAGTGTAAGTTGCAGT
TGAGACCCATGTAAATTCATTCATCGCTGCGGGGGTCGGAGGTCAGAGCGAGCGTCTCGC
CGGCCGCAGGAGGAAGATGGCGGTAGAATCGCGCGTCACCCAGGAGGAAATTAAGAAGGA
GCCGGAGAAGCCCATCGACCGGGAGAAGACCTGCCCGCTGCTGCTGCGCGTCTTCACCAC
CAACAACGGCCGCCACCACCGCATGGACGAGTTCTCCCGCGGAAACGTGCCGTCCAGCGA
GCTGCAGATCTACACTTGGATGGATGCAACCTTGAAAGAATTGACTAGTTTAGTAAAAGA
AGTCTACCCAGAAGCTAGAAAGAAGGGCACACACTTCAATTTTGCAATTGTTTTTACGGA
TCTTAAGAGGCCCGGCTATCGAGTGAAGGAGATCGGCAGCACCATGTCCGGGAGGAAGGG
CACCGACGACTCCATGACGCTGCAGTCGCAGAAGTTCCAGATAGGAGACTACCTGGACAT
AGCCATCACGCCTCCCAACCGGGCCCCGCCGACCTCCGGGCGCATGAGGCCCTACTAAAC
TTGCCTTACTGTTTCCTGAATTTATTTTTCATTCAGTGATGTAAAATAAACGTCCACTTT
TTCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCTGTCACCTTGATCCTAAGATGCCTTCCAGTTTCAGAGATGTTAAAGTGCGTCTTAG
AAAGAATGAAAAAGAATGAAAGGCGCCTGGGTTAACGTGGACCTCTTCCTCCTTAGGTGG
GTAAAGCGCTAGGCCAGCGTTCCACAGAAACACAGGGGCACACTGCCATTCTGACCTTAA
TTCTTCGAAATGTCAAATATTGAGGCTGGTAAGGGGATATCTGGAGGCAAATAGCATTAT
TAGGCGCTTTAAAATTACTTCAGTCCTAAGACCGTGACAGTTTGTAGTGTAAGTTGCAGT
TGAGACCCATGTAAATTCATTCATCGCTGCGGGGGTCGGAGGTCAGAGCGAGCGTCTCGC
CGGCCGCAGGAGGAAGATGGCGGTAGAATCGCGCGTCACCCAGGAGGAAATTAAGAAGGA
GCCGGAGAAGCCCATCGACCGGGAGAAGACCTGCCCGCTGCTGCTGCGCGTCTTCACCAC
CAACAACGGCCGCCACCACCGCATGGACGAGTTCTCCCGCGGAAACGTGCCGTCCAGCGA
GCTGCAGATCTACACTTGGATGGATGCAACCTTGAAAGAATTGACTAGTTTAGTAAAAGA
AGTCTACCCAGAAGCTAGAAAGAAGGGCACACACTTCAATTTTGCAATTGTTTTTACGGA
TCTTAAGAGGCCCGGCTATCGAGTGAAGGAGATCGGCAGCACCATGTCCGGGAGGAAGGG
CACCGACGACTCCATGACGCTGCAGTCGCAGAAGTTCCAGATAGGAGACTACCTGGACAT
AGCCATCACGCCTCCCAACCGGGCCCCGCCGACCTCCGGGCGCATGAGGCCCTACTAAAC
TTGCCTTACTGTTTCCTGAATTTATTTTTCATTCAGTGATGTAAAATAAACGTCCACTTT
TTCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55639529|ref|XP_509567.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55639529|ref|XP_509567.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               693-812, - strand, RNAz p=0.989918

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               693-812, - strand, RNAz p=0.989918

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               317-448, gnl|bosTau2|chr12 (21174423-21174293)
               

               
               317-448, gnl|Hg17|chr13 (20612690-20612820)
               

               
               317-448, gnl|Mm7|chr14 (52666145-52666275)
               


               
               534-880, gnl|bosTau2|chr10 (1256958-1256618)
               

               
               534-880, gnl|Hg17|chr5 (75407207-75407544)
               

               
               534-880, gnl|Mm7|chr8 (94414532-94414872)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               317-448, gnl|bosTau2|chr12 (21174423-21174293)
               

               
               317-448, gnl|Hg17|chr13 (20612690-20612820)
               

               
               317-448, gnl|Mm7|chr14 (52666145-52666275)
               


               
               534-880, gnl|bosTau2|chr10 (1256958-1256618)
               

               
               534-880, gnl|Hg17|chr5 (75407207-75407544)
               

               
               534-880, gnl|Mm7|chr8 (94414532-94414872)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

Help | Less info


               
               ill (1.05356)
               

               
               elu (0.770713)
               

               
               nlu (0.766724)
               

               
               hyp (0.714184)
               

               
               ton (0.702001)
               

               
               hlv (0.557025)
               

               
               nep (0.551775)
               

               
               duo (0.518403)
               

               
               med (0.465008)
               

               
               nbm (0.397298)
               

               
               jej (0.395687)
               

               
               eje (0.395335)
               

               
               ese (0.379507)
               

               
               eep (0.367692)
               

               
               fbs (0.350693)
               

               
               jca (0.34188)
               

               
               cje (0.330469)
               

               
               eli (0.303628)
               

               
               cag (0.302389)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (1.05356)
               

               
               elu (0.770713)
               

               
               nlu (0.766724)
               

               
               hyp (0.714184)
               

               
               ton (0.702001)
               

               
               hlv (0.557025)
               

               
               nep (0.551775)
               

               
               duo (0.518403)
               

               
               med (0.465008)
               

               
               nbm (0.397298)
               

               
               jej (0.395687)
               

               
               eje (0.395335)
               

               
               ese (0.379507)
               

               
               eep (0.367692)
               

               
               fbs (0.350693)
               

               
               jca (0.34188)
               

               
               cje (0.330469)
               

               
               eli (0.303628)
               

               
               cag (0.302389)
               

               
               lnt (0.284616)
               

               
               nca (0.273748)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               eru (0.240096)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

	317-448, gnl\|bosTau2\|chr12 (21174423-21174293)
	317-448, gnl\|Hg17\|chr13 (20612690-20612820)
	317-448, gnl\|Mm7\|chr14 (52666145-52666275)

	534-880, gnl\|bosTau2\|chr10 (1256958-1256618)
	534-880, gnl\|Hg17\|chr5 (75407207-75407544)
	534-880, gnl\|Mm7\|chr8 (94414532-94414872)

	ill (1.05356)
	elu (0.770713)
	nlu (0.766724)
	hyp (0.714184)
	ton (0.702001)
	hlv (0.557025)
	nep (0.551775)
	duo (0.518403)
	med (0.465008)
	nbm (0.397298)
	jej (0.395687)
	eje (0.395335)
	ese (0.379507)
	eep (0.367692)
	fbs (0.350693)
	jca (0.34188)
	cje (0.330469)
	eli (0.303628)
	cag (0.302389)
	lnt (0.284616)
	nca (0.273748)
	pla (0.267344)
	cov (0.264306)
	cly (0.241284)
	eru (0.240096)
	ebs (0.236602)
	ecc (0.23007)
	tes (0.207814)
	fli (0.202881)
	fcc (0.197785)
	col (0.195008)
	fty (0.17584)
	mcp (0.170648)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	csp (0.161186)
	cli (0.152812)
	lin (0.145603)
	ret (0.128733)