Non-Coding RNA Search

Ss1.1-rhlv28b_b9.5

Sequence:


               
               CTTTCCTCCTTGTAGAGTAATCGTCAGTGTCCCTAATGCAGGCTTGAAGCATCAGTGCCC
ACGTGACAGTGTGTTCTGCTTGTGGTTTCCTTGTGCACGTGTCGGCATGAAAACACGTTT
TGAGGGTATTTTGGCGGCCGTAAGTGCCCCCATGAGGCCAGGAGTGGACCTTGGGGAAAC
CAGCATGTCTCAAGCACGTCACAGGGGAGTGAAGGAAACACAAGAAGGCAGGGCTGGGTG
ACTTGGAGTCTCCCTCCTCCCACAGCCTCCTCTCCCCTCCCCCTTTCTCTCCCAAGGTGT
CCCCCAGCCCGAGAATTAAGTGACTGGGTTGTGACCTCTGGCCCACGGGATGGGGACACA
AACCTCTGGGCCGGGCAGAAGGTGCTCTTTCTTCCTTTGATGTCCCGGCCACTCTGTCCA
GACGTCGCTGGGCCTCCAGGCAGCTCATCCATCTCGAGCTGCAGGCAGGCAGGAAAAGGC
CATCGGACCCCTGATCCCAGCATGAGTGACCAGAGGCAGTTTCCGGGACACGGTGAGGCC
ACCAAAGGTCGCTCGTCCTTCAAGAGCCTGTGCGGGGTCCTCTGAAAAGAAGCCATATGT
CAATACCCTGCCCCTTCCTTCTCTGTCTGCAGAGACCATTGCCAAACATTGTCAAGACCA
GTTCCAGTTCTCAGAGCAAACTGTGCTTCTAGCAGATTCTACCCCAACTGTGTTTGGATG
TCCAGTGGTTTTTATTTCTGATTTTTAAAAAAAAATTCCAGGTGTGCCATACCCACTTTC
CTGCAGTGTTTTAATATTGTGTGGAATTGTTAATACCAAGTGAATTAATCCACAATAAAA
AGGCTCACTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCCTCCTTGTAGAGTAATCGTCAGTGTCCCTAATGCAGGCTTGAAGCATCAGTGCCC
ACGTGACAGTGTGTTCTGCTTGTGGTTTCCTTGTGCACGTGTCGGCATGAAAACACGTTT
TGAGGGTATTTTGGCGGCCGTAAGTGCCCCCATGAGGCCAGGAGTGGACCTTGGGGAAAC
CAGCATGTCTCAAGCACGTCACAGGGGAGTGAAGGAAACACAAGAAGGCAGGGCTGGGTG
ACTTGGAGTCTCCCTCCTCCCACAGCCTCCTCTCCCCTCCCCCTTTCTCTCCCAAGGTGT
CCCCCAGCCCGAGAATTAAGTGACTGGGTTGTGACCTCTGGCCCACGGGATGGGGACACA
AACCTCTGGGCCGGGCAGAAGGTGCTCTTTCTTCCTTTGATGTCCCGGCCACTCTGTCCA
GACGTCGCTGGGCCTCCAGGCAGCTCATCCATCTCGAGCTGCAGGCAGGCAGGAAAAGGC
CATCGGACCCCTGATCCCAGCATGAGTGACCAGAGGCAGTTTCCGGGACACGGTGAGGCC
ACCAAAGGTCGCTCGTCCTTCAAGAGCCTGTGCGGGGTCCTCTGAAAAGAAGCCATATGT
CAATACCCTGCCCCTTCCTTCTCTGTCTGCAGAGACCATTGCCAAACATTGTCAAGACCA
GTTCCAGTTCTCAGAGCAAACTGTGCTTCTAGCAGATTCTACCCCAACTGTGTTTGGATG
TCCAGTGGTTTTTATTTCTGATTTTTAAAAAAAAATTCCAGGTGTGCCATACCCACTTTC
CTGCAGTGTTTTAATATTGTGTGGAATTGTTAATACCAAGTGAATTAATCCACAATAAAA
AGGCTCACTGTC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               348-850, gnl|bosTau2|chr7 (17878223-17878737)
               

               
               348-850, gnl|Hg17|chr19 (2462813-2462225)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               348-850, gnl|bosTau2|chr7 (17878223-17878737)
               

               
               348-850, gnl|Hg17|chr19 (2462813-2462225)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)

	348-850, gnl\|bosTau2\|chr7 (17878223-17878737)
	348-850, gnl\|Hg17\|chr19 (2462813-2462225)

	fbs (0.350693)
	vin (0.332557)
	mgp (0.230681)
	spc (0.226732)
	hea (0.204499)
	fcc (0.197785)
	ski (0.146735)
	pty (0.142714)
	hlv (0.139256)
	ste (0.135208)