Ss1.1-rhlv28b_c5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGACAGATGCCATCCAGAGGACCGAGGAGCTGGAGGAGGCCAAGAAAAAGCTGGCCCAG AGGCTGCAGGACGCCGAGGAGGCCGTCGAGGCCGTGAACGCCAAGTGCTCCTCGCTGGAG AAGACCAAGCACCGGCTGCAGAATGAGATCGAGGACCTGATGGTGGACGTGGAGCGCTCC AACGCGGCCGCCGCCGCCCTCGACAAGAAGCAGAGGAACTTCGACAAGATCCTGGCCGAG TGGAAGCAGAAGTATGAGGAGTCACAGTCAGAGCTGGAGTCCTCGCAGAAGGAGGCGCGC TCACTCAGCACCGAGCTCTTCAAGCTCAAGAACGCCTATGAGGAGTCTCTGGAGCACCTG GAGACCTTCAAGCGGGAGAACAAGAACCTGCAGGAGGAGATCTCCGACCTTACTGAGCAG CTGGGTTCCAGTGGAAAGACCATCCATGAGCTGGAGAAAGTCCGCAAGCAGCTGGAGGCA GAGAAGCTGGAGCTGCAGTCGGCCCTGGAAGAGGCCGAGGCCTCCCTGGAGCATGAAGAG GGCAAGATCCTCCGGGCCCAGCTGGAGTTCAACCAGATCAAGGCAGAGATGGAGCGGAAG CTGGCCGAGAAGGATGAGGAGATGGAACAGGCCAAACGCAACCACCTGCGGGTGGTGGAC TCGCTGCAGACCTCCCTGGACGCAGAGACACGCAGCCGCAATGAGGCCCTGCGGGTGAAG AAGAAGATGGAGGGCGACCTCAACGAGATGGAGATCCAGCTCAGCCACGCCAATCGCATG GCCGCCGAGGCCCAGAAGCAAGTCAAGAGCCTGCAGAGCTTGCTGAAGGACACCCAGATC CAGCTGGATGACGCGGTCCGTGCCAATGATGACCTGAAGGAGAACATTGCCATCGTGGAG CGGCGCAACAACCTGCTGCAGGCCGAGCTGGAGGAGCTGCGGGCCGTGGTGGAGCAGACA GAGAGGTCCCGGAAGCTGGCTGAGCAGGAGCTGATTGAGACCAGCGAGCGGGTGCAGCTG CTGCACTCCCAGAACACTAGCCTCATCAACCAGAAGAAGAAGATGGAAGCAGACCTGTCC CAGCTTCAGACTGAAGTGGAGGAGGCGGTGCAGGAGTGCAGGAACGCCGAGGAGAAGGCC AAGAAGGCCATCACGGATGCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACC AGCGCGCACCTGGAGCGCATGAAGAAGAACATGGAGCAGACCATCAAGGACCTGCAGCAC CGGCTGGACGAGGCCGAGCAGATCGCCCTCAAGGGCGGCAAGAAGCAGCTGCAGAAGCTG GAGGCCCGGGTGCGGGAGCTGGAGAATGAGCTGGAGGCCGAGCAGAAGCGCAACGCGGAG TCGGTCAAGGGCATGAGGAAGAGTGAGCGTCGCATCAAGGAGCTCACCTACCAGACGGAA GAGGACAGGAAGAACCTGCTGCGGCTACAGGACCTGGTGGACAAGCTACAGCTGAAGGTC AAGGCCTACAAGCGCCAGGCCGAGGAGGCGGAGGAACAGGCCAACACCAACCTGTCCAAG TTCCGCAAGGTGCAGCACGAGCTGGATGAGGCGGAGGAGCGGGCGGACATCGCTGAGTCC CAGGTCAACAAGCTTCGGGCCAAGAGCCGTGACATCGGCACCAAGGGCTTGAACGAGGAG TAGATTTGCCACATCTTGATCTGCCCCATCCTGAGGGCGCAACAAAGCTCCCAGTCCTGG AGCCTGGAGAGCAGCCCCTTTGGAGGAAGCAGAATAAAGCACTTTTCTTTGAAGTGAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGACAGATGCCATCCAGAGGACCGAGGAGCTGGAGGAGGCCAAGAAAAAGCTGGCCCAG AGGCTGCAGGACGCCGAGGAGGCCGTCGAGGCCGTGAACGCCAAGTGCTCCTCGCTGGAG AAGACCAAGCACCGGCTGCAGAATGAGATCGAGGACCTGATGGTGGACGTGGAGCGCTCC AACGCGGCCGCCGCCGCCCTCGACAAGAAGCAGAGGAACTTCGACAAGATCCTGGCCGAG TGGAAGCAGAAGTATGAGGAGTCACAGTCAGAGCTGGAGTCCTCGCAGAAGGAGGCGCGC TCACTCAGCACCGAGCTCTTCAAGCTCAAGAACGCCTATGAGGAGTCTCTGGAGCACCTG GAGACCTTCAAGCGGGAGAACAAGAACCTGCAGGAGGAGATCTCCGACCTTACTGAGCAG CTGGGTTCCAGTGGAAAGACCATCCATGAGCTGGAGAAAGTCCGCAAGCAGCTGGAGGCA GAGAAGCTGGAGCTGCAGTCGGCCCTGGAAGAGGCCGAGGCCTCCCTGGAGCATGAAGAG GGCAAGATCCTCCGGGCCCAGCTGGAGTTCAACCAGATCAAGGCAGAGATGGAGCGGAAG CTGGCCGAGAAGGATGAGGAGATGGAACAGGCCAAACGCAACCACCTGCGGGTGGTGGAC TCGCTGCAGACCTCCCTGGACGCAGAGACACGCAGCCGCAATGAGGCCCTGCGGGTGAAG AAGAAGATGGAGGGCGACCTCAACGAGATGGAGATCCAGCTCAGCCACGCCAATCGCATG GCCGCCGAGGCCCAGAAGCAAGTCAAGAGCCTGCAGAGCTTGCTGAAGGACACCCAGATC CAGCTGGATGACGCGGTCCGTGCCAATGATGACCTGAAGGAGAACATTGCCATCGTGGAG CGGCGCAACAACCTGCTGCAGGCCGAGCTGGAGGAGCTGCGGGCCGTGGTGGAGCAGACA GAGAGGTCCCGGAAGCTGGCTGAGCAGGAGCTGATTGAGACCAGCGAGCGGGTGCAGCTG CTGCACTCCCAGAACACTAGCCTCATCAACCAGAAGAAGAAGATGGAAGCAGACCTGTCC CAGCTTCAGACTGAAGTGGAGGAGGCGGTGCAGGAGTGCAGGAACGCCGAGGAGAAGGCC AAGAAGGCCATCACGGATGCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACC AGCGCGCACCTGGAGCGCATGAAGAAGAACATGGAGCAGACCATCAAGGACCTGCAGCAC CGGCTGGACGAGGCCGAGCAGATCGCCCTCAAGGGCGGCAAGAAGCAGCTGCAGAAGCTG GAGGCCCGGGTGCGGGAGCTGGAGAATGAGCTGGAGGCCGAGCAGAAGCGCAACGCGGAG TCGGTCAAGGGCATGAGGAAGAGTGAGCGTCGCATCAAGGAGCTCACCTACCAGACGGAA GAGGACAGGAAGAACCTGCTGCGGCTACAGGACCTGGTGGACAAGCTACAGCTGAAGGTC AAGGCCTACAAGCGCCAGGCCGAGGAGGCGGAGGAACAGGCCAACACCAACCTGTCCAAG TTCCGCAAGGTGCAGCACGAGCTGGATGAGGCGGAGGAGCGGGCGGACATCGCTGAGTCC CAGGTCAACAAGCTTCGGGCCAAGAGCCGTGACATCGGCACCAAGGGCTTGAACGAGGAG TAGATTTGCCACATCTTGATCTGCCCCATCCTGAGGGCGCAACAAAGCTCCCAGTCCTGG AGCCTGGAGAGCAGCCCCTTTGGAGGAAGCAGAATAAAGCACTTTTCTTTGAAGTGAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 717-1135, - strand, RNAz p=0.969245 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 717-1135, - strand, RNAz p=0.969245 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 39-228, gnl|bosTau2|chr10 (13737804-13737993) | |
| 39-228, gnl|canFam2|chr8 (6639564-6639755) | |
| 39-228, gnl|danRer3|chr24 (32688489-32688677) | |
| 39-228, gnl|dasNov1|scaffold_31623 (14008-14199) | |
| 39-228, gnl|echTel1|scaffold_322757 (39133-38942) | |
| 39-228, gnl|fr1|chrUn (258624909-258625098) | |
| 39-228, gnl|galGal2|chr18 (340392-340583) | |
| 39-228, gnl|hg17|chr14 (22927200-22927391) | |
| 39-228, gnl|Hg17|chr14 (22927393-22927204) | |
| 39-228, gnl|loxAfr1|scaffold_121 (48869-48679) | |
| 39-228, gnl|mm7|chr14 (49815194-49815385) | |
| 39-228, gnl|Mm7|chr14 (49815387-49815198) | |
| 39-228, gnl|monDom2|scaffold_12 (26314836-26314645) | |
| 39-228, gnl|oryCun1|scaffold_206763 (109189-109380) | |
| 39-228, gnl|panTro1|chr15 (21898925-21899116) | |
| 39-228, gnl|rheMac2|chr7 (86227545-86227736) | |
| 39-228, gnl|rn3|chr15 (33067206-33067397) | |
| 39-228, gnl|tetNig1|chrUn_random (96887610-96887422) | |
| 39-228, gnl|xenTro1|scaffold_53 (99141-98950) | |
| 518-833, gnl|bosTau2|chr10 (13721447-13721131) | |
| 518-833, gnl|Hg17|chr14 (22955363-22955047) | |
| 518-833, gnl|Mm7|chr14 (49840654-49840338) | |
| 1017-1157, gnl|bosTau2|chr19 (22704489-22704349) | |
| 1017-1157, gnl|canFam2|chr5 (37911424-37911572) | |
| 1017-1157, gnl|danRer3|chr5 (27639112-27638951) | |
| 1017-1157, gnl|dasNov1|scaffold_199 (93281-93429) | |
| 1017-1157, gnl|echTel1|scaffold_289995 (37173-37321) | |
| 1017-1157, gnl|fr1|chrUn (127063976-127063828) | |
| 1017-1157, gnl|galGal2|chr18 (568207-568339) | |
| 1017-1157, gnl|hg17|chr17 (10475649-10475797) | |
| 1017-1157, gnl|Hg17|chr17 (10475794-10475654) | |
| 1017-1157, gnl|loxAfr1|scaffold_7030 (15153-15301) | |
| 1017-1157, gnl|mm7|chr11 (67181573-67181426) | |
| 1017-1157, gnl|Mm7|chr11 (67181428-67181566) | |
| 1017-1157, gnl|monDom2|scaffold_18 (2857374-2857226) | |
| 1017-1157, gnl|oryCun1|scaffold_206763 (105196-105344) | |
| 1017-1157, gnl|panTro1|chr19_random (27943393-27943245) | |
| 1017-1157, gnl|rheMac2|chr16 (10383380-10383528) | |
| 1017-1157, gnl|rn3|chr10 (53812064-53811917) | |
| 1017-1157, gnl|tetNig1|chrUn_random (96352534-96352393) | |
| 1017-1157, gnl|xenTro1|scaffold_270 (82083-81935) | |
| 1159-1434, gnl|bosTau2|chr10 (13742312-13742587) | |
| 1159-1434, gnl|Hg17|chr14 (22923766-22923491) | |
| 1159-1434, gnl|Mm7|chr14 (49811139-49810864) | |
| 1530-1666, gnl|bosTau2|chr10 (13744437-13744573) | |
| 1530-1666, gnl|canFam2|chr8 (6632980-6633124) | |
| 1530-1666, gnl|danRer3|chr24 (32686316-32686458) | |
| 1530-1666, gnl|dasNov1|scaffold_2441 (72133-71994) | |
| 1530-1666, gnl|echTel1|scaffold_322757 (45303-45163) | |
| 1530-1666, gnl|fr1|chrUn (270424073-270423932) | |
| 1530-1666, gnl|galGal2|chr18 (334925-335065) | |
| 1530-1666, gnl|hg17|chr14 (22921473-22921617) | |
| 1530-1666, gnl|Hg17|chr14 (22921612-22921476) | |
| 1530-1666, gnl|loxAfr1|scaffold_6807 (13137-13278) | |
| 1530-1666, gnl|mm7|chr14 (49808935-49809079) | |
| 1530-1666, gnl|Mm7|chr14 (49809074-49808938) | |
| 1530-1666, gnl|monDom2|scaffold_12 (26335446-26335307) | |
| 1530-1666, gnl|oryCun1|scaffold_206763 (103099-103243) | |
| 1530-1666, gnl|panTro1|chr15 (21893201-21893345) | |
| 1530-1666, gnl|rheMac2|chr7 (86221823-86221967) | |
| 1530-1666, gnl|rn3|chr15 (33060642-33060786) | |
| 1530-1666, gnl|tetNig1|chrUn_random (96889665-96889521) | |
| 1530-1666, gnl|xenTro1|scaffold_53 (103520-103379) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 39-228, gnl|bosTau2|chr10 (13737804-13737993) | |
| 39-228, gnl|canFam2|chr8 (6639564-6639755) | |
| 39-228, gnl|danRer3|chr24 (32688489-32688677) | |
| 39-228, gnl|dasNov1|scaffold_31623 (14008-14199) | |
| 39-228, gnl|echTel1|scaffold_322757 (39133-38942) | |
| 39-228, gnl|fr1|chrUn (258624909-258625098) | |
| 39-228, gnl|galGal2|chr18 (340392-340583) | |
| 39-228, gnl|hg17|chr14 (22927200-22927391) | |
| 39-228, gnl|Hg17|chr14 (22927393-22927204) | |
| 39-228, gnl|loxAfr1|scaffold_121 (48869-48679) | |
| 39-228, gnl|mm7|chr14 (49815194-49815385) | |
| 39-228, gnl|Mm7|chr14 (49815387-49815198) | |
| 39-228, gnl|monDom2|scaffold_12 (26314836-26314645) | |
| 39-228, gnl|oryCun1|scaffold_206763 (109189-109380) | |
| 39-228, gnl|panTro1|chr15 (21898925-21899116) | |
| 39-228, gnl|rheMac2|chr7 (86227545-86227736) | |
| 39-228, gnl|rn3|chr15 (33067206-33067397) | |
| 39-228, gnl|tetNig1|chrUn_random (96887610-96887422) | |
| 39-228, gnl|xenTro1|scaffold_53 (99141-98950) | |
| 518-833, gnl|bosTau2|chr10 (13721447-13721131) | |
| 518-833, gnl|Hg17|chr14 (22955363-22955047) | |
| 518-833, gnl|Mm7|chr14 (49840654-49840338) | |
| 1017-1157, gnl|bosTau2|chr19 (22704489-22704349) | |
| 1017-1157, gnl|canFam2|chr5 (37911424-37911572) | |
| 1017-1157, gnl|danRer3|chr5 (27639112-27638951) | |
| 1017-1157, gnl|dasNov1|scaffold_199 (93281-93429) | |
| 1017-1157, gnl|echTel1|scaffold_289995 (37173-37321) | |
| 1017-1157, gnl|fr1|chrUn (127063976-127063828) | |
| 1017-1157, gnl|galGal2|chr18 (568207-568339) | |
| 1017-1157, gnl|hg17|chr17 (10475649-10475797) | |
| 1017-1157, gnl|Hg17|chr17 (10475794-10475654) | |
| 1017-1157, gnl|loxAfr1|scaffold_7030 (15153-15301) | |
| 1017-1157, gnl|mm7|chr11 (67181573-67181426) | |
| 1017-1157, gnl|Mm7|chr11 (67181428-67181566) | |
| 1017-1157, gnl|monDom2|scaffold_18 (2857374-2857226) | |
| 1017-1157, gnl|oryCun1|scaffold_206763 (105196-105344) | |
| 1017-1157, gnl|panTro1|chr19_random (27943393-27943245) | |
| 1017-1157, gnl|rheMac2|chr16 (10383380-10383528) | |
| 1017-1157, gnl|rn3|chr10 (53812064-53811917) | |
| 1017-1157, gnl|tetNig1|chrUn_random (96352534-96352393) | |
| 1017-1157, gnl|xenTro1|scaffold_270 (82083-81935) | |
| 1159-1434, gnl|bosTau2|chr10 (13742312-13742587) | |
| 1159-1434, gnl|Hg17|chr14 (22923766-22923491) | |
| 1159-1434, gnl|Mm7|chr14 (49811139-49810864) | |
| 1530-1666, gnl|bosTau2|chr10 (13744437-13744573) | |
| 1530-1666, gnl|canFam2|chr8 (6632980-6633124) | |
| 1530-1666, gnl|danRer3|chr24 (32686316-32686458) | |
| 1530-1666, gnl|dasNov1|scaffold_2441 (72133-71994) | |
| 1530-1666, gnl|echTel1|scaffold_322757 (45303-45163) | |
| 1530-1666, gnl|fr1|chrUn (270424073-270423932) | |
| 1530-1666, gnl|galGal2|chr18 (334925-335065) | |
| 1530-1666, gnl|hg17|chr14 (22921473-22921617) | |
| 1530-1666, gnl|Hg17|chr14 (22921612-22921476) | |
| 1530-1666, gnl|loxAfr1|scaffold_6807 (13137-13278) | |
| 1530-1666, gnl|mm7|chr14 (49808935-49809079) | |
| 1530-1666, gnl|Mm7|chr14 (49809074-49808938) | |
| 1530-1666, gnl|monDom2|scaffold_12 (26335446-26335307) | |
| 1530-1666, gnl|oryCun1|scaffold_206763 (103099-103243) | |
| 1530-1666, gnl|panTro1|chr15 (21893201-21893345) | |
| 1530-1666, gnl|rheMac2|chr7 (86221823-86221967) | |
| 1530-1666, gnl|rn3|chr15 (33060642-33060786) | |
| 1530-1666, gnl|tetNig1|chrUn_random (96889665-96889521) | |
| 1530-1666, gnl|xenTro1|scaffold_53 (103520-103379) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| hlv (15.0397) | |
| ssp (9.21534) | |
| hea (6.33947) | |
| che (4.08942) | |
| mas (3.15457) | |
| ldo (0.970026) | |
| ste (0.946458) | |
| nms (0.855432) | |
| sme (0.610874) | |
| isp (0.451128) | |
| nca (0.410621) | |
| eru (0.360144) | |
| ton (0.351) | |
| vin (0.332557) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| cst (0.140036) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (15.0397) | |
| ssp (9.21534) | |
| hea (6.33947) | |
| che (4.08942) | |
| mas (3.15457) | |
| ldo (0.970026) | |
| ste (0.946458) | |
| nms (0.855432) | |
| sme (0.610874) | |
| isp (0.451128) | |
| nca (0.410621) | |
| eru (0.360144) | |
| ton (0.351) | |
| vin (0.332557) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| cst (0.140036) | |
| ese (0.126502) | |
| clu (0.119646) | |
| jca (0.11396) |