Non-Coding RNA Search

Ss1.1-rhlv28b_h7.5

Sequence:


               
               GGGTCCCTCTGGCCAAGCTGTCACCTAGGGATTTTTGTGGGATACACACACACACACACA
CACACCACACACCACACACACTCACATACTCTCACTCACCACACTTGTGGGCACACATGC
ACTCAGCACTGACACACGCCTAGCCAGTTCCTGACAGAAGCCTCTTCCCACCTGATGGGG
CCAGCCCCGCCATGAGTCTGAACTCTACGTCTGCTGTGGTTTGTATGCACTGTGTACTGG
AGACACACGCTGGCTGGACTGTGGGATCTGAATTACTCATAAATTATAGAGAAAAACCAG
AGACAGATGAAGGAGGAGGAGTTAGGACTGTCTGAAGTGCTAGGGGCTGGTTGTGAGGAG
TAGGTGGGGAAAAAAATTACTTCCAGCCTTTGAGAGGCTCAGCTGAGCCCACCCTTCCCT
CGGTGTGCAGAGTCACTGCGGCTGATCCCCTCGTTCCCCAGCATCAGACCACTAAGACTC
CTGTTCCTCCAGCATTCCCATCCCTTTCCCCTGCCACCCCTCACCTTTAAATGACGGGTC
TCAACCCCTCCCCCCCGGACATGTAATGATGGATGGAGCAAGGTGGTGGGACGTGGGGGG
AGGCTGGCATATGTGCGACTTTATTGCCAGTGGATTTCACGCACTTTAAAGTCCTGTGGC
TTGTGACCTCTTATCTGAATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTCCCTCTGGCCAAGCTGTCACCTAGGGATTTTTGTGGGATACACACACACACACACA
CACACCACACACCACACACACTCACATACTCTCACTCACCACACTTGTGGGCACACATGC
ACTCAGCACTGACACACGCCTAGCCAGTTCCTGACAGAAGCCTCTTCCCACCTGATGGGG
CCAGCCCCGCCATGAGTCTGAACTCTACGTCTGCTGTGGTTTGTATGCACTGTGTACTGG
AGACACACGCTGGCTGGACTGTGGGATCTGAATTACTCATAAATTATAGAGAAAAACCAG
AGACAGATGAAGGAGGAGGAGTTAGGACTGTCTGAAGTGCTAGGGGCTGGTTGTGAGGAG
TAGGTGGGGAAAAAAATTACTTCCAGCCTTTGAGAGGCTCAGCTGAGCCCACCCTTCCCT
CGGTGTGCAGAGTCACTGCGGCTGATCCCCTCGTTCCCCAGCATCAGACCACTAAGACTC
CTGTTCCTCCAGCATTCCCATCCCTTTCCCCTGCCACCCCTCACCTTTAAATGACGGGTC
TCAACCCCTCCCCCCCGGACATGTAATGATGGATGGAGCAAGGTGGTGGGACGTGGGGGG
AGGCTGGCATATGTGCGACTTTATTGCCAGTGGATTTCACGCACTTTAAAGTCCTGTGGC
TTGTGACCTCTTATCTGAATAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q64PI9_BACFR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q64PI9_BACFR

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               316-471, - strand, RNAz p=0.999549

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-471, - strand, RNAz p=0.999549

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-484, gnl|bosTau2|chr19 (39012190-39012663)
               

               
               1-484, gnl|Hg17|chr17 (38106458-38105853)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-484, gnl|bosTau2|chr19 (39012190-39012663)
               

               
               1-484, gnl|Hg17|chr17 (38106458-38105853)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	1-484, gnl\|bosTau2\|chr19 (39012190-39012663)
	1-484, gnl\|Hg17\|chr17 (38106458-38105853)

	fce (0.271592)
	fhi (0.169578)
	pty (0.142714)
	hlv (0.139256)
	ecc (0.115035)
	nbm (0.0993246)
	jej (0.0989218)