Non-Coding RNA Search

Ss1.1-rhlv29b_b7.5

Sequence:


               
               GCGTGGGGACCTTCTGCGTCGCTCCCTGCCGCTGAGTGGCCGCTTCCCTCCGGTGGGTTT
TCCGCGGGGCGCCGGGGAGGCTGGGCCCGGGGGCCAAGATGGAGTTGGTGCAGGTCCTGA
GGCGCGGGCTGCAGCAGGTCAGCGGCCACGGCGGCCTCCGCGGCTACCTACGGGTTCTCT
TCAGGGCAAACGATGTGAGAGTTGGAACCTTAGTAGGGGAGGACAAATACGGAAACAAAT
ACTATGAAGACAACAAGCAGTTTTTTGGCCGTCACCGGTGGGTTATATATACTACTGAGA
TGAATGGCAGAGACACCTTCTGGGATGTAGATGGAAGCATGGTGCCCCCGGAATGGCATC
GTTGGCTTCATTGTATGACTGATGATCCTCCAACAACAAAACCACCTACTGCTCGTAAAT
ACATTTGGACAAACCATAAATTCAACGTGAGTGGCACTCCACAGCAGTACGTACCCTATT
CCACCACTAGAAAGAAGATTCAGGAGTGGGTCCCACCTTCAACACCTTACAAGTAAAGAG
AACGAAAAACAATTTAAAGATGTAAAATAAGAGGCTTTTCCTATAATTGCGCCTTCATTA
CTTACTGTTACCTTGATTAAAATTATTTGATTAAGCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTGGGGACCTTCTGCGTCGCTCCCTGCCGCTGAGTGGCCGCTTCCCTCCGGTGGGTTT
TCCGCGGGGCGCCGGGGAGGCTGGGCCCGGGGGCCAAGATGGAGTTGGTGCAGGTCCTGA
GGCGCGGGCTGCAGCAGGTCAGCGGCCACGGCGGCCTCCGCGGCTACCTACGGGTTCTCT
TCAGGGCAAACGATGTGAGAGTTGGAACCTTAGTAGGGGAGGACAAATACGGAAACAAAT
ACTATGAAGACAACAAGCAGTTTTTTGGCCGTCACCGGTGGGTTATATATACTACTGAGA
TGAATGGCAGAGACACCTTCTGGGATGTAGATGGAAGCATGGTGCCCCCGGAATGGCATC
GTTGGCTTCATTGTATGACTGATGATCCTCCAACAACAAAACCACCTACTGCTCGTAAAT
ACATTTGGACAAACCATAAATTCAACGTGAGTGGCACTCCACAGCAGTACGTACCCTATT
CCACCACTAGAAAGAAGATTCAGGAGTGGGTCCCACCTTCAACACCTTACAAGTAAAGAG
AACGAAAAACAATTTAAAGATGTAAAATAAGAGGCTTTTCCTATAATTGCGCCTTCATTA
CTTACTGTTACCTTGATTAAAATTATTTGATTAAGCAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               N7BM_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               N7BM_BOVIN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               83-660, gnl|bosTau2|chr3 (64322582-64322013)
               

               
               83-660, gnl|Hg17|chr5 (179143973-179144510)
               

               
               83-660, gnl|Mm7|chr5 (129426212-129426731)
               


               
               224-569, gnl|bosTau2|chr2 (36099745-36100089)
               

               
               224-569, gnl|Hg17|chr5 (43261667-43261332)
               

               
               224-569, gnl|Mm7|chr5 (129426307-129426631)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-660, gnl|bosTau2|chr3 (64322582-64322013)
               

               
               83-660, gnl|Hg17|chr5 (179143973-179144510)
               

               
               83-660, gnl|Mm7|chr5 (129426212-129426731)
               


               
               224-569, gnl|bosTau2|chr2 (36099745-36100089)
               

               
               224-569, gnl|Hg17|chr5 (43261667-43261332)
               

               
               224-569, gnl|Mm7|chr5 (129426307-129426631)

Expressed library(ies): 57 entry(ies)

More info

Expressed library(ies): 57 entry(ies)

Help | Less info


               
               cbe (2.15311)
               

               
               ssp (1.3552)
               

               
               che (1.22683)
               

               
               bfe (1.19886)
               

               
               hlv (1.11405)
               

               
               hea (1.02249)
               

               
               vin (0.997672)
               

               
               cmu (0.931966)
               

               
               spc (0.906927)
               

               
               isp (0.902256)
               

               
               sto (0.899119)
               

               
               cje (0.660939)
               

               
               ova (0.645661)
               

               
               sme (0.610874)
               

               
               cte (0.58548)
               

               
               sag (0.548145)
               

               
               ton (0.526501)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               cki (0.495704)
               

               
               mga (0.480615)
               

               
               amn (0.417711)
               

               
               col (0.390016)
               

               
               sug (0.381874)
               

               
               pgl (0.35545)
               

               
               cut (0.339847)
               

               
               eje (0.296501)
               

               
               cst (0.280073)
               

               
               bla (0.248694)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (2.15311)
               

               
               ssp (1.3552)
               

               
               che (1.22683)
               

               
               bfe (1.19886)
               

               
               hlv (1.11405)
               

               
               hea (1.02249)
               

               
               vin (0.997672)
               

               
               cmu (0.931966)
               

               
               spc (0.906927)
               

               
               isp (0.902256)
               

               
               sto (0.899119)
               

               
               cje (0.660939)
               

               
               ova (0.645661)
               

               
               sme (0.610874)
               

               
               cte (0.58548)
               

               
               sag (0.548145)
               

               
               ton (0.526501)
               

               
               rec (0.519211)
               

               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               cki (0.495704)
               

               
               mga (0.480615)
               

               
               amn (0.417711)
               

               
               col (0.390016)
               

               
               sug (0.381874)
               

               
               pgl (0.35545)
               

               
               cut (0.339847)
               

               
               eje (0.296501)
               

               
               cst (0.280073)
               

               
               bla (0.248694)
               

               
               med (0.232504)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	83-660, gnl\|bosTau2\|chr3 (64322582-64322013)
	83-660, gnl\|Hg17\|chr5 (179143973-179144510)
	83-660, gnl\|Mm7\|chr5 (129426212-129426731)

	224-569, gnl\|bosTau2\|chr2 (36099745-36100089)
	224-569, gnl\|Hg17\|chr5 (43261667-43261332)
	224-569, gnl\|Mm7\|chr5 (129426307-129426631)

	cbe (2.15311)
	ssp (1.3552)
	che (1.22683)
	bfe (1.19886)
	hlv (1.11405)
	hea (1.02249)
	vin (0.997672)
	cmu (0.931966)
	spc (0.906927)
	isp (0.902256)
	sto (0.899119)
	cje (0.660939)
	ova (0.645661)
	sme (0.610874)
	cte (0.58548)
	sag (0.548145)
	ton (0.526501)
	rec (0.519211)
	pro (0.512033)
	thg (0.507164)
	cki (0.495704)
	mga (0.480615)
	amn (0.417711)
	col (0.390016)
	sug (0.381874)
	pgl (0.35545)
	cut (0.339847)
	eje (0.296501)
	cst (0.280073)
	bla (0.248694)
	med (0.232504)
	mas (0.210305)
	tes (0.207814)
	fcc (0.197785)
	fbs (0.175346)
	sin (0.174948)
	duo (0.172801)
	mcp (0.170648)
	fhi (0.169578)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	fco (0.157208)
	eli (0.151814)
	cag (0.151194)
	ski (0.146735)
	hyp (0.142837)
	ste (0.135208)
	lyg (0.133103)
	ute (0.132784)
	cov (0.132153)
	kid (0.129735)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)