Non-Coding RNA Search

Ss1.1-rhlv29b_d21.5

Sequence:


               
               AGCTCCCTCGGGGGCCCCCCAACCCCTGCCTCGCTTTCCGGGCCTGACTCTTCCCTCCTC
TGCCATCGTGTCGGGTCCGACGCTGTCGTCTGGGAAAGAAAGGCCTCCGGTGAAATAAGA
GCCCCCGTCCCCTCCCCCCAAAGGTTTTCATCTCCCTCGAAGTAGTCTATGCATTTCTCT
CTCTCTCTCTCTCTCTCCCTCTCTCTCTCCCTCTGGAACCGTTTTCTGCCTCTTCCCTTG
AGAAAACGGGCCTCTCGGGTCCCACCCACTGAGACCCCCTCAGAAAATGCTGTGCATTTT
GGAGACGTGAGGATCCGTTCAACATTCTGCAGGCATTTGCAAATAGCCTGTCCGAAAAGC
GGGACAAAGCGAGCAGACGAGGTGGTGTCCCCCGCGTCCCTTTCCACTGAGTAAGACCTC
GCTCTTTGCGATTGTGCAATAAACTACTTGCCCTGAGAGCGGGTGGCCACGCTCCTGCCC
AGACTACTAACTAACACAGCACAGGACGGCCCCGTCCAGCGAGCGGCGGGCCTCTTCCAG
AAGACTCCTAATAAGCTCAGCTTCCCCCCCACCCCCGCCCCCTGCCCCTGGCCCCTTGTA
TTGTGGTGTCTTACATTTTAGCAGTATTTTATATTTTCTGGAACGCACTAAGTCTTAGAT
GTTTCTAGAGCGCGTCTGTTCATACTCACAATCACAGACCTTTTTTTTTTTTCTCTTTAA
ACCCTCACAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTCCCTCGGGGGCCCCCCAACCCCTGCCTCGCTTTCCGGGCCTGACTCTTCCCTCCTC
TGCCATCGTGTCGGGTCCGACGCTGTCGTCTGGGAAAGAAAGGCCTCCGGTGAAATAAGA
GCCCCCGTCCCCTCCCCCCAAAGGTTTTCATCTCCCTCGAAGTAGTCTATGCATTTCTCT
CTCTCTCTCTCTCTCTCCCTCTCTCTCTCCCTCTGGAACCGTTTTCTGCCTCTTCCCTTG
AGAAAACGGGCCTCTCGGGTCCCACCCACTGAGACCCCCTCAGAAAATGCTGTGCATTTT
GGAGACGTGAGGATCCGTTCAACATTCTGCAGGCATTTGCAAATAGCCTGTCCGAAAAGC
GGGACAAAGCGAGCAGACGAGGTGGTGTCCCCCGCGTCCCTTTCCACTGAGTAAGACCTC
GCTCTTTGCGATTGTGCAATAAACTACTTGCCCTGAGAGCGGGTGGCCACGCTCCTGCCC
AGACTACTAACTAACACAGCACAGGACGGCCCCGTCCAGCGAGCGGCGGGCCTCTTCCAG
AAGACTCCTAATAAGCTCAGCTTCCCCCCCACCCCCGCCCCCTGCCCCTGGCCCCTTGTA
TTGTGGTGTCTTACATTTTAGCAGTATTTTATATTTTCTGGAACGCACTAAGTCTTAGAT
GTTTCTAGAGCGCGTCTGTTCATACTCACAATCACAGACCTTTTTTTTTTTTCTCTTTAA
ACCCTCACAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               218-312, - strand, RNAz p=0.961933

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-312, - strand, RNAz p=0.961933

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               218-712, gnl|bosTau2|chr25 (32104939-32105427)
               

               
               218-712, gnl|Hg17|chr7 (101494072-101494555)
               

               
               218-712, gnl|Mm7|chr5 (135238574-135238112)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               218-712, gnl|bosTau2|chr25 (32104939-32105427)
               

               
               218-712, gnl|Hg17|chr7 (101494072-101494555)
               

               
               218-712, gnl|Mm7|chr5 (135238574-135238112)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fty (0.17584)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)

	218-712, gnl\|bosTau2\|chr25 (32104939-32105427)
	218-712, gnl\|Hg17\|chr7 (101494072-101494555)
	218-712, gnl\|Mm7\|chr5 (135238574-135238112)

	fty (0.17584)
	hlv (0.139256)
	kid (0.129735)
	ese (0.126502)
	ecc (0.115035)