Ss1.1-rhlv29b_e16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACTTGGGACTAAAAGGACTCTCCCCAAGAAGAGCTTCGAACAGATCAGTGCCAACATC ACTAAGTTTAACATCCAGGGCCTTGTGATCATTGGGGGCTTTGAGGCTTACACAGGGGGC CTAGAGCTGATGGAAGGCAGGAAGCAGTATGACGAGCTCTGCATCCCGTTTGTGGTCATC CCTGCCACGGTCTCCAACAACGTGCCGGGCTCAGACTTCAGCGTGGGGGCCGACACAGCT CTCAACACCATCTGCATGACCTGTGACCGCATTAAGCAGTCCGCGGCGGGCACCAAGCGC CGTGTGTTCATCATCGAAACCATGGGCGGCTACTGTGGCTACCTGGCCACCATGGCGGGA CTGGCAGCGGGGGCCGATGCTGCCTATATTTTTGAGGAGCCCTTCACCATTCGGGACCTG CAGGTGAATGTGGAACATCTGGTGCAAAAGATGAAAACAACTGTGAAGAGGGGCTTGGTG TTAAGGAACGAGAAGTGCAATGAGAACTACACCACTGACTTCATCTTCAACCTGTACTCT GAGGAGGGGAAAGGCATCTTCGACAGCAGGAAGAATGTGCTTGGCCACATGCAGCAGGGT GGGAGCCCAACTCCATTTGATAGGAATTTTGCCACTAAGATGGGTGCGAAGGCTATGAAC TGGATGTCTGGGAAAATCAAAGAGAGTTACCGCAATGGGCGGATCTTTGCCAATACCCCA GACTCGGGCTGTGTTCTGGGCATGCGCAAGAGGGCCTTGGTCTTTCAACCAGTGACTGAG CTGAAGGAACAGACGGATTTTGAGCACCGTATCCCCAAGGAACAGTGGTGGCTGAAGCTG AGGCCCATCCTCAAAATCCTGGCCAAATATGAGATTGACTTGGATACGTCAGAGCATGCC CACCTGGAGCACATCACTCGGAAGCGGTCTGGAGAAGCTACCATCTAAACCTCTCTGCAG TGTGGGGAACAGATTGTCTGATCATCATCAGCTCATCCCCGATAGATCCAAGTCCATGTA TTCTCAAGTATTTCAGCTCATTTTTCATTAGGTTTCCTTTTATGCTGAAGCCATGGTCAG CTCTGGCCAGGGAGCTGGGGCAGGGGCAGTAAGTGGAAGCTCCTTATAGGTAGAATTTGT CATGCTTCTACCCCTGCTTCATCTGTCACACAAGGCTGAGCTCCTCTAGTGCTACTGCTA GATTTCAGTTACTCGGTTAGAATTTTCCTAAAAATAAGCTTTATTTATTTCTTTGTGATA ACAAAGTCTTGGTTCCTCTACTACTTTTACCACAGTGACAAACAATAACTACACTAATAA ATGCCAACTGGTCACTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACTTGGGACTAAAAGGACTCTCCCCAAGAAGAGCTTCGAACAGATCAGTGCCAACATC ACTAAGTTTAACATCCAGGGCCTTGTGATCATTGGGGGCTTTGAGGCTTACACAGGGGGC CTAGAGCTGATGGAAGGCAGGAAGCAGTATGACGAGCTCTGCATCCCGTTTGTGGTCATC CCTGCCACGGTCTCCAACAACGTGCCGGGCTCAGACTTCAGCGTGGGGGCCGACACAGCT CTCAACACCATCTGCATGACCTGTGACCGCATTAAGCAGTCCGCGGCGGGCACCAAGCGC CGTGTGTTCATCATCGAAACCATGGGCGGCTACTGTGGCTACCTGGCCACCATGGCGGGA CTGGCAGCGGGGGCCGATGCTGCCTATATTTTTGAGGAGCCCTTCACCATTCGGGACCTG CAGGTGAATGTGGAACATCTGGTGCAAAAGATGAAAACAACTGTGAAGAGGGGCTTGGTG TTAAGGAACGAGAAGTGCAATGAGAACTACACCACTGACTTCATCTTCAACCTGTACTCT GAGGAGGGGAAAGGCATCTTCGACAGCAGGAAGAATGTGCTTGGCCACATGCAGCAGGGT GGGAGCCCAACTCCATTTGATAGGAATTTTGCCACTAAGATGGGTGCGAAGGCTATGAAC TGGATGTCTGGGAAAATCAAAGAGAGTTACCGCAATGGGCGGATCTTTGCCAATACCCCA GACTCGGGCTGTGTTCTGGGCATGCGCAAGAGGGCCTTGGTCTTTCAACCAGTGACTGAG CTGAAGGAACAGACGGATTTTGAGCACCGTATCCCCAAGGAACAGTGGTGGCTGAAGCTG AGGCCCATCCTCAAAATCCTGGCCAAATATGAGATTGACTTGGATACGTCAGAGCATGCC CACCTGGAGCACATCACTCGGAAGCGGTCTGGAGAAGCTACCATCTAAACCTCTCTGCAG TGTGGGGAACAGATTGTCTGATCATCATCAGCTCATCCCCGATAGATCCAAGTCCATGTA TTCTCAAGTATTTCAGCTCATTTTTCATTAGGTTTCCTTTTATGCTGAAGCCATGGTCAG CTCTGGCCAGGGAGCTGGGGCAGGGGCAGTAAGTGGAAGCTCCTTATAGGTAGAATTTGT CATGCTTCTACCCCTGCTTCATCTGTCACACAAGGCTGAGCTCCTCTAGTGCTACTGCTA GATTTCAGTTACTCGGTTAGAATTTTCCTAAAAATAAGCTTTATTTATTTCTTTGTGATA ACAAAGTCTTGGTTCCTCTACTACTTTTACCACAGTGACAAACAATAACTACACTAATAA ATGCCAACTGGTCACTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1071-1187, + strand, RNAz p=0.97764 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1071-1187, + strand, RNAz p=0.97764 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BX537703, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 251-425, gnl|bosTau2|chr5 (25660388-25660561) | |
| 251-425, gnl|canFam2|chr27 (9635688-9635509) | |
| 251-425, gnl|danRer3|chr6 (20598629-20598809) | |
| 251-425, gnl|dasNov1|scaffold_13229 (77033-77212) | |
| 251-425, gnl|echTel1|scaffold_284847 (12728-12906) | |
| 251-425, gnl|fr1|chrUn (41715014-41714832) | |
| 251-425, gnl|galGal2|chrUn (134173868-134173692) | |
| 251-425, gnl|hg17|chr12 (46822822-46823001) | |
| 251-425, gnl|Hg17|chr12 (46822825-46822998) | |
| 251-425, gnl|loxAfr1|scaffold_125703 (8596-8775) | |
| 251-425, gnl|mm7|chr15 (98131352-98131531) | |
| 251-425, gnl|Mm7|chr15 (98131355-98131528) | |
| 251-425, gnl|monDom2|scaffold_189 (635183-635363) | |
| 251-425, gnl|oryCun1|scaffold_174478 (3520-3698) | |
| 251-425, gnl|panTro1|chr10 (47892292-47892471) | |
| 251-425, gnl|rheMac2|chr11 (45222391-45222570) | |
| 251-425, gnl|rn3|chr7 (136917216-136917395) | |
| 251-425, gnl|tetNig1|chr9 (3250438-3250615) | |
| 251-425, gnl|xenTro1|scaffold_34 (451426-451608) | |
| 484-603, gnl|bosTau2|chr5 (25661808-25661926) | |
| 484-603, gnl|canFam2|chr27 (9634242-9634117) | |
| 484-603, gnl|danRer3|chr6 (20599087-20599206) | |
| 484-603, gnl|dasNov1|scaffold_13229 (72854-72979) | |
| 484-603, gnl|echTel1|scaffold_284847 (14468-14593) | |
| 484-603, gnl|fr1|chrUn (41714630-41714514) | |
| 484-603, gnl|galGal2|chrUn (134173383-134173258) | |
| 484-603, gnl|hg17|chr12 (46824089-46824214) | |
| 484-603, gnl|Hg17|chr12 (46824094-46824212) | |
| 484-603, gnl|loxAfr1|scaffold_39002 (17204-17323) | |
| 484-603, gnl|mm7|chr15 (98132898-98133040) | |
| 484-603, gnl|Mm7|chr15 (98132903-98133022) | |
| 484-603, gnl|monDom2|scaffold_189 (635803-635924) | |
| 484-603, gnl|oryCun1|scaffold_174478 (4585-4708) | |
| 484-603, gnl|panTro1|chr10 (47893560-47893685) | |
| 484-603, gnl|rheMac2|chr11 (45223659-45223784) | |
| 484-603, gnl|rn3|chr7 (136919253-136919377) | |
| 484-603, gnl|tetNig1|chr9 (3250815-3250936) | |
| 484-603, gnl|xenTro1|scaffold_34 (452456-452581) | |
| 804-1339, gnl|bosTau2|chr5 (25663750-25664286) | |
| 804-1339, gnl|Hg17|chr12 (46825614-46826154) | |
| 804-1339, gnl|Mm7|chr15 (98135098-98135630) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 251-425, gnl|bosTau2|chr5 (25660388-25660561) | |
| 251-425, gnl|canFam2|chr27 (9635688-9635509) | |
| 251-425, gnl|danRer3|chr6 (20598629-20598809) | |
| 251-425, gnl|dasNov1|scaffold_13229 (77033-77212) | |
| 251-425, gnl|echTel1|scaffold_284847 (12728-12906) | |
| 251-425, gnl|fr1|chrUn (41715014-41714832) | |
| 251-425, gnl|galGal2|chrUn (134173868-134173692) | |
| 251-425, gnl|hg17|chr12 (46822822-46823001) | |
| 251-425, gnl|Hg17|chr12 (46822825-46822998) | |
| 251-425, gnl|loxAfr1|scaffold_125703 (8596-8775) | |
| 251-425, gnl|mm7|chr15 (98131352-98131531) | |
| 251-425, gnl|Mm7|chr15 (98131355-98131528) | |
| 251-425, gnl|monDom2|scaffold_189 (635183-635363) | |
| 251-425, gnl|oryCun1|scaffold_174478 (3520-3698) | |
| 251-425, gnl|panTro1|chr10 (47892292-47892471) | |
| 251-425, gnl|rheMac2|chr11 (45222391-45222570) | |
| 251-425, gnl|rn3|chr7 (136917216-136917395) | |
| 251-425, gnl|tetNig1|chr9 (3250438-3250615) | |
| 251-425, gnl|xenTro1|scaffold_34 (451426-451608) | |
| 484-603, gnl|bosTau2|chr5 (25661808-25661926) | |
| 484-603, gnl|canFam2|chr27 (9634242-9634117) | |
| 484-603, gnl|danRer3|chr6 (20599087-20599206) | |
| 484-603, gnl|dasNov1|scaffold_13229 (72854-72979) | |
| 484-603, gnl|echTel1|scaffold_284847 (14468-14593) | |
| 484-603, gnl|fr1|chrUn (41714630-41714514) | |
| 484-603, gnl|galGal2|chrUn (134173383-134173258) | |
| 484-603, gnl|hg17|chr12 (46824089-46824214) | |
| 484-603, gnl|Hg17|chr12 (46824094-46824212) | |
| 484-603, gnl|loxAfr1|scaffold_39002 (17204-17323) | |
| 484-603, gnl|mm7|chr15 (98132898-98133040) | |
| 484-603, gnl|Mm7|chr15 (98132903-98133022) | |
| 484-603, gnl|monDom2|scaffold_189 (635803-635924) | |
| 484-603, gnl|oryCun1|scaffold_174478 (4585-4708) | |
| 484-603, gnl|panTro1|chr10 (47893560-47893685) | |
| 484-603, gnl|rheMac2|chr11 (45223659-45223784) | |
| 484-603, gnl|rn3|chr7 (136919253-136919377) | |
| 484-603, gnl|tetNig1|chr9 (3250815-3250936) | |
| 484-603, gnl|xenTro1|scaffold_34 (452456-452581) | |
| 804-1339, gnl|bosTau2|chr5 (25663750-25664286) | |
| 804-1339, gnl|Hg17|chr12 (46825614-46826154) | |
| 804-1339, gnl|Mm7|chr15 (98135098-98135630) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| hlv (1.81033) | |
| mas (0.630915) | |
| sme (0.610874) | |
| nms (0.427716) | |
| ldo (0.38801) | |
| elu (0.385356) | |
| ton (0.351) | |
| fbs (0.350693) | |
| tbr (0.308356) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| bfe (0.149858) | |
| che (0.136314) | |
| ste (0.135208) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (1.81033) | |
| mas (0.630915) | |
| sme (0.610874) | |
| nms (0.427716) | |
| ldo (0.38801) | |
| elu (0.385356) | |
| ton (0.351) | |
| fbs (0.350693) | |
| tbr (0.308356) | |
| cbl (0.229595) | |
| ece (0.229305) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| bfe (0.149858) | |
| che (0.136314) | |
| ste (0.135208) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| eje (0.0988338) |