Non-Coding RNA Search

Ss1.1-rhlv29b_f22.5

Sequence:


               
               GCCGCGGCCCCGGGCGCTCAGAGCGCTCCTTCGCTCGGGCCGGCTGCGCGCGGCGAGGGG
GCGGTGCCGGGGGCGGCGCCCGGGGAGAGGAGGAGCCGCGTCCCGCCCCGCCCACGGGAC
CGCCCACGAGACTCGGCTGCCGCGGGGGCCCCAGACCCGAGGAGGAGTCAGGCCTGCGGC
CTCTGCACCAGGACGCCGCCACCCCGGCTTCGTCGGGGAAGCGGGACCGCGTCCGCCCCC
TCTGGCCCCGCCCGGCCGCCGCTGCGCTTTGGTTTCTGACATCCCGGTCTGGTGCTTTCT
GCAGGAACACGCGTTCTGTGGAACCGCTTCCGAAAGAAGTGACCGATTCACTGACCCCAC
AGCTCGGGGCGGAGGTCGAGTTTGTCTTCTACAGATTTTTTTAAAAGCAGGGATTAATCC
TACGGCCATCTTTTGTGGTACTTTGGCCTCTAACCTTTACCAAGAATCACTGTGTTTACA
TGAAATGACAATTTGATACTGTATTTGATATACACCTATTTTTTGTTACCGGGGTTTACA
TTGCGCTGGATGACCTGGGGCGCTCTCCCAGGCCCACCTGGTCACAGGTGAGCGAAAGTC
CGTCCCTGGACAGAATCAGGCAGCATTTCTACAAACACAAGCCGTCAGAAACCAAGGAAA
TTCCTCCACCTGTGTAGGTTAATTTTCAGGAGAAAATTTAAACTATAATTTAAAATCTTA
AGCTTCTTTTCTACAGCAAAAAAATGGGGGACTCTTGTTTTTTTATCACACTTCACCGAG
TGAGGGTATTTTTATTGTTTCTACGGACTATGTAAAGATACAGCTTTTGTGGGTGTCATT
GGAACCATACAGTCACTGGAGCCCGGGGAGAACCTGCGCTCCCGGCGCCCCTCCCTTCCC
GGCCTGCGTCTCAGAACTGCCCTGTTCCAGCTGCGGGAGCTGCCTGAGCACAGGAGCAGT
TTGCCTTCACGTCCAGGCAGAACTGGAAAGGAAAGTCTTCCGTTTACTCTCGTGTTTCGG
AAGCAAACTCTGTTCTTCAGCTGCGCTTCTCTCCGTCGGCGGGGCAGGTGTTTCCCTGCG
TGTGTATATATGTTCATGTGTGTACATAGGCACCTCCCTACCGGGTCTATTTATAGCCTC
CATGCTGCTGGCAGTGTGTCACTTTACAGCCCTCCCTGCGCCCACCACACAGGCTCCCGG
CCGAGAGCAGGGCCAGGCCTCTCCAGAGTGTGTCTTCAAGGGCGTACAAGCACCGCAGCT
TCTCTTCTGGTGAATAAGTTATTTGGGAAATGGTGTGTCACCTCATTTACTTAATACATT
CGTTGTTCAGACACCCCCCTGCCACCCCAACCCGGGACTGTCCGTCATTTCTCTGATCGC
TTCCTCATAAAGGCACTTTAACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCGGCCCCGGGCGCTCAGAGCGCTCCTTCGCTCGGGCCGGCTGCGCGCGGCGAGGGG
GCGGTGCCGGGGGCGGCGCCCGGGGAGAGGAGGAGCCGCGTCCCGCCCCGCCCACGGGAC
CGCCCACGAGACTCGGCTGCCGCGGGGGCCCCAGACCCGAGGAGGAGTCAGGCCTGCGGC
CTCTGCACCAGGACGCCGCCACCCCGGCTTCGTCGGGGAAGCGGGACCGCGTCCGCCCCC
TCTGGCCCCGCCCGGCCGCCGCTGCGCTTTGGTTTCTGACATCCCGGTCTGGTGCTTTCT
GCAGGAACACGCGTTCTGTGGAACCGCTTCCGAAAGAAGTGACCGATTCACTGACCCCAC
AGCTCGGGGCGGAGGTCGAGTTTGTCTTCTACAGATTTTTTTAAAAGCAGGGATTAATCC
TACGGCCATCTTTTGTGGTACTTTGGCCTCTAACCTTTACCAAGAATCACTGTGTTTACA
TGAAATGACAATTTGATACTGTATTTGATATACACCTATTTTTTGTTACCGGGGTTTACA
TTGCGCTGGATGACCTGGGGCGCTCTCCCAGGCCCACCTGGTCACAGGTGAGCGAAAGTC
CGTCCCTGGACAGAATCAGGCAGCATTTCTACAAACACAAGCCGTCAGAAACCAAGGAAA
TTCCTCCACCTGTGTAGGTTAATTTTCAGGAGAAAATTTAAACTATAATTTAAAATCTTA
AGCTTCTTTTCTACAGCAAAAAAATGGGGGACTCTTGTTTTTTTATCACACTTCACCGAG
TGAGGGTATTTTTATTGTTTCTACGGACTATGTAAAGATACAGCTTTTGTGGGTGTCATT
GGAACCATACAGTCACTGGAGCCCGGGGAGAACCTGCGCTCCCGGCGCCCCTCCCTTCCC
GGCCTGCGTCTCAGAACTGCCCTGTTCCAGCTGCGGGAGCTGCCTGAGCACAGGAGCAGT
TTGCCTTCACGTCCAGGCAGAACTGGAAAGGAAAGTCTTCCGTTTACTCTCGTGTTTCGG
AAGCAAACTCTGTTCTTCAGCTGCGCTTCTCTCCGTCGGCGGGGCAGGTGTTTCCCTGCG
TGTGTATATATGTTCATGTGTGTACATAGGCACCTCCCTACCGGGTCTATTTATAGCCTC
CATGCTGCTGGCAGTGTGTCACTTTACAGCCCTCCCTGCGCCCACCACACAGGCTCCCGG
CCGAGAGCAGGGCCAGGCCTCTCCAGAGTGTGTCTTCAAGGGCGTACAAGCACCGCAGCT
TCTCTTCTGGTGAATAAGTTATTTGGGAAATGGTGTGTCACCTCATTTACTTAATACATT
CGTTGTTCAGACACCCCCCTGCCACCCCAACCCGGGACTGTCCGTCATTTCTCTGATCGC
TTCCTCATAAAGGCACTTTAACAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               288-1103, gnl|bosTau2|chr12 (46854959-46854168)
               

               
               288-1103, gnl|Hg17|chr13 (112799463-112800405)
               

               
               288-1103, gnl|Mm7|chr8 (12993620-12994496)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               288-1103, gnl|bosTau2|chr12 (46854959-46854168)
               

               
               288-1103, gnl|Hg17|chr13 (112799463-112800405)
               

               
               288-1103, gnl|Mm7|chr8 (12993620-12994496)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	288-1103, gnl\|bosTau2\|chr12 (46854959-46854168)
	288-1103, gnl\|Hg17\|chr13 (112799463-112800405)
	288-1103, gnl\|Mm7\|chr8 (12993620-12994496)

	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	duo (0.172801)
	eye (0.170503)
	cag (0.151194)
	pty (0.142714)
	hlv (0.139256)
	pla (0.133672)
	cov (0.132153)
	ebs (0.118301)
	ecc (0.115035)