Non-Coding RNA Search

Ss1.1-rhlv29b_i2.5

Sequence:


               
               CTTCTGCCTCTCCGTTTCTGTATGCACCCGGTAGGGGGAGGGTGAACGCAGGGCTCCCAC
CCTGAGGCGCCCTCTTCCCGTTGCCCACCCCTCCCCCGCAGGCCCTCTGTGAGATCCTTC
TCAGGCCTCCTCCAGAATGGGGCTGGCCCTCTCTTGGGGGTATGAGATCACATCTCCGCC
TTTCCATGAAAGACAGTCTGCAGAATCAAATGCAATTTTTCAATCTGAGAGCTCGCTTTG
AGGAATTTGGTTACTGTGATTGCCTCTGAAGCCTATGTATGCCACGGAGGTTCTCTACAC
TCTGAGGTTTCTGAAATCAGAAGTGAAAAAACAGATGAATAAATGAGCCTCCTGCCACTA
ACCCCTCCTCCTGAAGCCACAACACGGTTTCAGGTTCCAATCAGAAATGCTGGCAAGATG
AAATTCCCATGCATAAATGTGATCCACAGATGGGCCTGGTGGTATTTGTAACTTTTTGCA
AGGCATTTTTTTATATATATTTTCGTGCACAGTTTTTTAATGTTTCTTTAGTAAACAAAT
GTATTTCAGAATATATTTATAGTCAAACAATTCATATCTTTGAAGTGGAGCCATATGAAT
GTCAGTAGGTTACATTTCTCTATTATCGTAAACTACTGGCAATTTGTAAAGAAATATATA
TAACATATCAGTGTGATTGCAGCTTTTTAATGTTAGCCACAGTGTATTTTTTCACTTGTA
CTAAAATTGTATCAAATGTGACATTATATGCACTAGCAATAAAATGCTAATTGTTTCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTGCCTCTCCGTTTCTGTATGCACCCGGTAGGGGGAGGGTGAACGCAGGGCTCCCAC
CCTGAGGCGCCCTCTTCCCGTTGCCCACCCCTCCCCCGCAGGCCCTCTGTGAGATCCTTC
TCAGGCCTCCTCCAGAATGGGGCTGGCCCTCTCTTGGGGGTATGAGATCACATCTCCGCC
TTTCCATGAAAGACAGTCTGCAGAATCAAATGCAATTTTTCAATCTGAGAGCTCGCTTTG
AGGAATTTGGTTACTGTGATTGCCTCTGAAGCCTATGTATGCCACGGAGGTTCTCTACAC
TCTGAGGTTTCTGAAATCAGAAGTGAAAAAACAGATGAATAAATGAGCCTCCTGCCACTA
ACCCCTCCTCCTGAAGCCACAACACGGTTTCAGGTTCCAATCAGAAATGCTGGCAAGATG
AAATTCCCATGCATAAATGTGATCCACAGATGGGCCTGGTGGTATTTGTAACTTTTTGCA
AGGCATTTTTTTATATATATTTTCGTGCACAGTTTTTTAATGTTTCTTTAGTAAACAAAT
GTATTTCAGAATATATTTATAGTCAAACAATTCATATCTTTGAAGTGGAGCCATATGAAT
GTCAGTAGGTTACATTTCTCTATTATCGTAAACTACTGGCAATTTGTAAAGAAATATATA
TAACATATCAGTGTGATTGCAGCTTTTTAATGTTAGCCACAGTGTATTTTTTCACTTGTA
CTAAAATTGTATCAAATGTGACATTATATGCACTAGCAATAAAATGCTAATTGTTTCATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               27-221, - strand, RNAz p=0.998737
               

               
               535-780, + strand, RNAz p=0.901171

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               27-221, - strand, RNAz p=0.998737
               

               
               535-780, + strand, RNAz p=0.901171

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               42-98, + strand, RNAmicro p=0.999474
               

               
               26-113, - strand, RNAmicro p=0.970654

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               42-98, + strand, RNAmicro p=0.999474
               

               
               26-113, - strand, RNAmicro p=0.970654

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_199168, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_199168, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr28 (33671776-33672555)
               

               
               1-780, gnl|Hg17|chr10 (44193381-44192590)
               

               
               1-780, gnl|Mm7|chr6 (117200590-117201351)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr28 (33671776-33672555)
               

               
               1-780, gnl|Hg17|chr10 (44193381-44192590)
               

               
               1-780, gnl|Mm7|chr6 (117200590-117201351)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               spl (0.429553)
               

               
               cmu (0.372787)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               lun (0.300978)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               cmu (0.372787)
               

               
               csp (0.322373)
               

               
               cag (0.302389)
               

               
               lun (0.300978)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	27-221, - strand, RNAz p=0.998737
	535-780, + strand, RNAz p=0.901171

	42-98, + strand, RNAmicro p=0.999474
	26-113, - strand, RNAmicro p=0.970654

	1-780, gnl\|bosTau2\|chr28 (33671776-33672555)
	1-780, gnl\|Hg17\|chr10 (44193381-44192590)
	1-780, gnl\|Mm7\|chr6 (117200590-117201351)

	spl (0.429553)
	cmu (0.372787)
	csp (0.322373)
	cag (0.302389)
	lun (0.300978)
	eye (0.170503)
	cki (0.165235)
	cli (0.152812)
	eli (0.151814)
	fat (0.147427)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	ssp (0.13552)
	ste (0.135208)
	ese (0.126502)
	tra (0.123092)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)