Non-Coding RNA Search

Ss1.1-rhlv29b_l15.5.5

Sequence:


               
               CACCTCTCCTGGCTACTCGCCCACCAGCCCCACCTATAGCCTCACCAGCCCAGCCATCAG
CCCGGACGACAGTGATGAGGAGAACTGAGGGTGAGCAGTGCCCAGTGGCACCTGGCTAGG
TGAAGGGTGGCTTCTGGGGGCTCTGCCGTCCTCTCCCTTCCCCCCCGGGGTGCAGTCCCC
ATCCAGCTCCCTTGTACATAGTTTCTTGTGACAAAGTTGCCATTGAAGTTCTGGTCCCAT
TTCCGCTGGGGCTTTTGTCTTGTTCTCCGCTTGTGCTGTCACCTGGCTGTGGTGTCTCCT
TCCTGCCCCACCTACCCCAGGCCTGTCCCAAATCCAGGATCCCTTCTTGCCTGTGGCTTG
ACTGAGGGGGTAAAGGGTATTTTAACTTCTTAGGGGTAGTTCCTACTCTGGGTCGTTACA
TCTGATCTTTGGAAAGAACAAAGCGAAAGCTGCCTTTTGTCTGTTATTTTATTTTTTGAA
GTTTAAATAAAGTTTACTAATTTTGACCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCTCTCCTGGCTACTCGCCCACCAGCCCCACCTATAGCCTCACCAGCCCAGCCATCAG
CCCGGACGACAGTGATGAGGAGAACTGAGGGTGAGCAGTGCCCAGTGGCACCTGGCTAGG
TGAAGGGTGGCTTCTGGGGGCTCTGCCGTCCTCTCCCTTCCCCCCCGGGGTGCAGTCCCC
ATCCAGCTCCCTTGTACATAGTTTCTTGTGACAAAGTTGCCATTGAAGTTCTGGTCCCAT
TTCCGCTGGGGCTTTTGTCTTGTTCTCCGCTTGTGCTGTCACCTGGCTGTGGTGTCTCCT
TCCTGCCCCACCTACCCCAGGCCTGTCCCAAATCCAGGATCCCTTCTTGCCTGTGGCTTG
ACTGAGGGGGTAAAGGGTATTTTAACTTCTTAGGGGTAGTTCCTACTCTGGGTCGTTACA
TCTGATCTTTGGAAAGAACAAAGCGAAAGCTGCCTTTTGTCTGTTATTTTATTTTTTGAA
GTTTAAATAAAGTTTACTAATTTTGACCAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-508, gnl|bosTau2|chr15 (25604185-25603674)
               

               
               1-508, gnl|Hg17|chr17 (7358133-7358653)
               

               
               1-508, gnl|Mm7|chr11 (69816071-69815575)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-508, gnl|bosTau2|chr15 (25604185-25603674)
               

               
               1-508, gnl|Hg17|chr17 (7358133-7358653)
               

               
               1-508, gnl|Mm7|chr11 (69816071-69815575)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               elu (0.385356)
               

               
               hlv (0.278513)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               hlv (0.278513)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	1-508, gnl\|bosTau2\|chr15 (25604185-25603674)
	1-508, gnl\|Hg17\|chr17 (7358133-7358653)
	1-508, gnl\|Mm7\|chr11 (69816071-69815575)

	elu (0.385356)
	hlv (0.278513)
	eye (0.170503)
	cag (0.151194)
	hyp (0.142837)
	pla (0.133672)
	cov (0.132153)
	eep (0.122564)
	ecc (0.115035)