Ss1.1-rhlv29b_m24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGGGGCCGGCTGACGGTAACGGGTTGAGAGGCTGTGAGAAGAGCGAGTCGAAGATGA ATGCCCGAGGACTTGGATCTCAGCTAAAGGACAGTATTCCAGTTACTGAACTTTCAGCAA GTGGACCTTTTGAAAGTCAAGATCTTCTTCGAAAAGGCTTTTCTTGTGTCAGAAATGAAC TTTTGCCCAGTCATCCTCTTGAATTATCAGAAAAAAATTTCCAGCTCAACCAAGATAAAA TGAACTTTTCCACCCTGAGAAACATCCAGGGTCTGTTTGCTCCCCTCAAACTACAGATGG AATTCAAGGCAGTACAGCAGGTTCAGCGTCTTCCATTTCTTCCAAGCTCAAACCTGTCAC TGGATATTTTGCGGGGTAATGATGAGACTATTGGATTTGAAGATATTCTTAATGACCCGT CACAAAGTGAACTAATGGGAGAACCACATTTGATGGTTGAATATAAACTCGGTTTACTGT AATGCAGTGTGCTGTACATGGAAATAGAGGGTCTGCAACTTTATAGTCGTCTTTTTACTA CAATTTGATGTGCACAACATTAAAAGTACTGACACTTGAAAAAAAAAACCTAAATAGTAT CTGTAATCATTTGAAATTCTTTGGGTCTTTGGTTTATGCCCGTGTGATAATTGAAAGCAC TAAAGGAAGATGATTTTAAAACATCTCATTTATATTAAAACGATAGCCTTCTGTCTTTAA AAAAAAATGTTGCTAATTAATAATATAAAACTTCGTTGGTTCCAATTCAATCTACTTTCT AGTTACTCCGTAAATTTAATTTTGAGTAACCATTATCAGCATTTGAGTCAGCAGCCTTCA TGGTAGCATCTTTCAAATAAATGTCTGTAATTGATTTCAGTGGGAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGGGGCCGGCTGACGGTAACGGGTTGAGAGGCTGTGAGAAGAGCGAGTCGAAGATGA ATGCCCGAGGACTTGGATCTCAGCTAAAGGACAGTATTCCAGTTACTGAACTTTCAGCAA GTGGACCTTTTGAAAGTCAAGATCTTCTTCGAAAAGGCTTTTCTTGTGTCAGAAATGAAC TTTTGCCCAGTCATCCTCTTGAATTATCAGAAAAAAATTTCCAGCTCAACCAAGATAAAA TGAACTTTTCCACCCTGAGAAACATCCAGGGTCTGTTTGCTCCCCTCAAACTACAGATGG AATTCAAGGCAGTACAGCAGGTTCAGCGTCTTCCATTTCTTCCAAGCTCAAACCTGTCAC TGGATATTTTGCGGGGTAATGATGAGACTATTGGATTTGAAGATATTCTTAATGACCCGT CACAAAGTGAACTAATGGGAGAACCACATTTGATGGTTGAATATAAACTCGGTTTACTGT AATGCAGTGTGCTGTACATGGAAATAGAGGGTCTGCAACTTTATAGTCGTCTTTTTACTA CAATTTGATGTGCACAACATTAAAAGTACTGACACTTGAAAAAAAAAACCTAAATAGTAT CTGTAATCATTTGAAATTCTTTGGGTCTTTGGTTTATGCCCGTGTGATAATTGAAAGCAC TAAAGGAAGATGATTTTAAAACATCTCATTTATATTAAAACGATAGCCTTCTGTCTTTAA AAAAAAATGTTGCTAATTAATAATATAAAACTTCGTTGGTTCCAATTCAATCTACTTTCT AGTTACTCCGTAAATTTAATTTTGAGTAACCATTATCAGCATTTGAGTCAGCAGCCTTCA TGGTAGCATCTTTCAAATAAATGTCTGTAATTGATTTCAGTGGGAACA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 31-412, gnl|bosTau2|chr7 (16287646-16288025) | |
| 31-412, gnl|Hg17|chrX (82621488-82621111) | |
| 31-412, gnl|Mm7|chr15 (89062754-89062427) | |
| 219-322, gnl|bosTau2|chr12 (15281137-15281240) | |
| 219-322, gnl|canFam2|chr25 (14060064-14059941) | |
| 219-322, gnl|canFam2|chr4 (73660268-73660165) | |
| 219-322, gnl|danRer3|chr21 (29410906-29411042) | |
| 219-322, gnl|dasNov1|scaffold_119133 (1312-1209) | |
| 219-322, gnl|dasNov1|scaffold_29857 (55289-55165) | |
| 219-322, gnl|echTel1|scaffold_160700 (7710-7586) | |
| 219-322, gnl|echTel1|scaffold_321769 (36753-36653) | |
| 219-322, gnl|fr1|chrUn (244527905-244527785) | |
| 219-322, gnl|hg17|chr13 (28140599-28140723) | |
| 219-322, gnl|Hg17|chr13 (28140610-28140713) | |
| 219-322, gnl|hg17|chrX (82621200-82621304) | |
| 219-322, gnl|loxAfr1|scaffold_199051 (685-582) | |
| 219-322, gnl|loxAfr1|scaffold_40344 (35790-35668) | |
| 219-322, gnl|mm7|chr15 (89062506-89062591) | |
| 219-322, gnl|mm7|chr5 (146763805-146763928) | |
| 219-322, gnl|Mm7|chr5 (146763816-146763919) | |
| 219-322, gnl|monDom2|scaffold_11 (43547483-43547578) | |
| 219-322, gnl|monDom2|scaffold_15 (38015505-38015629) | |
| 219-322, gnl|oryCun1|scaffold_145982 (10577-10482) | |
| 219-322, gnl|oryCun1|scaffold_213997 (62523-62399) | |
| 219-322, gnl|panTro1|chr14 (27325118-27325242) | |
| 219-322, gnl|panTro1|chrX (85176317-85176395) | |
| 219-322, gnl|rheMac2|chr17 (8307098-8307222) | |
| 219-322, gnl|rheMac2|chrX (82294975-82295079) | |
| 219-322, gnl|rn3|chr12 (7755836-7755713) | |
| 219-322, gnl|rn3|chr17 (26265120-26265017) | |
| 219-322, gnl|tetNig1|chrUn_random (134397156-134397043) | |
| 414-886, gnl|bosTau2|chr12 (15285657-15286108) | |
| 414-886, gnl|Hg17|chr13 (28150171-28150645) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-412, gnl|bosTau2|chr7 (16287646-16288025) | |
| 31-412, gnl|Hg17|chrX (82621488-82621111) | |
| 31-412, gnl|Mm7|chr15 (89062754-89062427) | |
| 219-322, gnl|bosTau2|chr12 (15281137-15281240) | |
| 219-322, gnl|canFam2|chr25 (14060064-14059941) | |
| 219-322, gnl|canFam2|chr4 (73660268-73660165) | |
| 219-322, gnl|danRer3|chr21 (29410906-29411042) | |
| 219-322, gnl|dasNov1|scaffold_119133 (1312-1209) | |
| 219-322, gnl|dasNov1|scaffold_29857 (55289-55165) | |
| 219-322, gnl|echTel1|scaffold_160700 (7710-7586) | |
| 219-322, gnl|echTel1|scaffold_321769 (36753-36653) | |
| 219-322, gnl|fr1|chrUn (244527905-244527785) | |
| 219-322, gnl|hg17|chr13 (28140599-28140723) | |
| 219-322, gnl|Hg17|chr13 (28140610-28140713) | |
| 219-322, gnl|hg17|chrX (82621200-82621304) | |
| 219-322, gnl|loxAfr1|scaffold_199051 (685-582) | |
| 219-322, gnl|loxAfr1|scaffold_40344 (35790-35668) | |
| 219-322, gnl|mm7|chr15 (89062506-89062591) | |
| 219-322, gnl|mm7|chr5 (146763805-146763928) | |
| 219-322, gnl|Mm7|chr5 (146763816-146763919) | |
| 219-322, gnl|monDom2|scaffold_11 (43547483-43547578) | |
| 219-322, gnl|monDom2|scaffold_15 (38015505-38015629) | |
| 219-322, gnl|oryCun1|scaffold_145982 (10577-10482) | |
| 219-322, gnl|oryCun1|scaffold_213997 (62523-62399) | |
| 219-322, gnl|panTro1|chr14 (27325118-27325242) | |
| 219-322, gnl|panTro1|chrX (85176317-85176395) | |
| 219-322, gnl|rheMac2|chr17 (8307098-8307222) | |
| 219-322, gnl|rheMac2|chrX (82294975-82295079) | |
| 219-322, gnl|rn3|chr12 (7755836-7755713) | |
| 219-322, gnl|rn3|chr17 (26265120-26265017) | |
| 219-322, gnl|tetNig1|chrUn_random (134397156-134397043) | |
| 414-886, gnl|bosTau2|chr12 (15285657-15286108) | |
| 414-886, gnl|Hg17|chr13 (28150171-28150645) |
| Expressed library(ies): 57 entry(ies) | More info |
| Expressed library(ies): 57 entry(ies) | Help | Less info |
| ova (1.16219) | |
| thg (1.14112) | |
| hea (1.02249) | |
| sme (0.91631) | |
| fat (0.884564) | |
| cte (0.87822) | |
| tes (0.831255) | |
| nlu (0.575043) | |
| ill (0.526778) | |
| pro (0.512033) | |
| mcp (0.511945) | |
| sug (0.509165) | |
| isp (0.451128) | |
| lyg (0.399308) | |
| cmu (0.372787) | |
| med (0.348756) | |
| spc (0.340097) | |
| vin (0.332557) | |
| nje (0.33184) | |
| fco (0.314416) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| kid (0.259471) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| jej (0.197844) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cki (0.165235) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 57 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (1.16219) | |
| thg (1.14112) | |
| hea (1.02249) | |
| sme (0.91631) | |
| fat (0.884564) | |
| cte (0.87822) | |
| tes (0.831255) | |
| nlu (0.575043) | |
| ill (0.526778) | |
| pro (0.512033) | |
| mcp (0.511945) | |
| sug (0.509165) | |
| isp (0.451128) | |
| lyg (0.399308) | |
| cmu (0.372787) | |
| med (0.348756) | |
| spc (0.340097) | |
| vin (0.332557) | |
| nje (0.33184) | |
| fco (0.314416) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| kid (0.259471) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| mgp (0.230681) | |
| ecc (0.23007) | |
| nms (0.213858) | |
| jej (0.197844) | |
| aor (0.195274) | |
| col (0.195008) | |
| nep (0.183925) | |
| sag (0.182715) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| duo (0.172801) | |
| cki (0.165235) | |
| mga (0.160205) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| che (0.136314) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) | |
| ldo (0.0970026) |