Non-Coding RNA Search

Ss1.1-rhlv30b_d20.5

Sequence:


               
               CTCCTCCCTCGGGGGCGGGGACACGCGGGGCCCAAGATGGCGGCCAGCCGCTACCGGCGT
TTTCTCAGGCTCTGTGAGGAATGGCCGCTGGACGAGACCAAACGGGGCCGGGACTTGGGC
GCTTATCTGCGGCAGCGGGTAGCGCAGGCCTTTCGGGAGGGAGAGAACACCCAGATTGCA
GAGCCCGAGGCCTGTGATCAGATGTACGAGAGCTTAGCTCGGCTCCATTCAAACTATTAC
AAACACAAGTACCCTCGCCCCAGAGACACCAGCTTCAGTGGGCTGTCCCTGGAAGAGTAC
AAGCTGATCCTGTCCACAGATACCTTGGATGAGTTCAAGGAGATGGATAAAGGCGTGTGG
AAGAAACTGCAGGAGAGGTTTGCCCCCAGGAATCCCGAGGAGAAACACAAGGCCTGGGCC
CGCGCCTTGTCGCGCCCGCGTACCTGAGCGCGAAGTCTTGTTTGCTGCCATCCTCAATAA
AACGCCCCAATCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTCCCTCGGGGGCGGGGACACGCGGGGCCCAAGATGGCGGCCAGCCGCTACCGGCGT
TTTCTCAGGCTCTGTGAGGAATGGCCGCTGGACGAGACCAAACGGGGCCGGGACTTGGGC
GCTTATCTGCGGCAGCGGGTAGCGCAGGCCTTTCGGGAGGGAGAGAACACCCAGATTGCA
GAGCCCGAGGCCTGTGATCAGATGTACGAGAGCTTAGCTCGGCTCCATTCAAACTATTAC
AAACACAAGTACCCTCGCCCCAGAGACACCAGCTTCAGTGGGCTGTCCCTGGAAGAGTAC
AAGCTGATCCTGTCCACAGATACCTTGGATGAGTTCAAGGAGATGGATAAAGGCGTGTGG
AAGAAACTGCAGGAGAGGTTTGCCCCCAGGAATCCCGAGGAGAAACACAAGGCCTGGGCC
CGCGCCTTGTCGCGCCCGCGTACCTGAGCGCGAAGTCTTGTTTGCTGCCATCCTCAATAA
AACGCCCCAATCCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57094420|ref|XP_532110.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57094420|ref|XP_532110.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-239, + strand, RNAz p=0.722802

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-239, + strand, RNAz p=0.722802

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-510, gnl|bosTau2|chr18 (41731755-41732258)
               

               
               1-510, gnl|Mm7|chr9 (105263322-105262851)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-510, gnl|bosTau2|chr18 (41731755-41732258)
               

               
               1-510, gnl|Mm7|chr9 (105263322-105262851)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               ecc (0.46014)
               

               
               mas (0.42061)
               

               
               eye (0.341006)
               

               
               eje (0.296501)
               

               
               che (0.272628)
               

               
               cov (0.264306)
               

               
               ebs (0.236602)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.46014)
               

               
               mas (0.42061)
               

               
               eye (0.341006)
               

               
               eje (0.296501)
               

               
               che (0.272628)
               

               
               cov (0.264306)
               

               
               ebs (0.236602)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	1-510, gnl\|bosTau2\|chr18 (41731755-41732258)
	1-510, gnl\|Mm7\|chr9 (105263322-105262851)

	ecc (0.46014)
	mas (0.42061)
	eye (0.341006)
	eje (0.296501)
	che (0.272628)
	cov (0.264306)
	ebs (0.236602)
	hea (0.204499)
	col (0.195008)
	ton (0.1755)
	mcp (0.170648)
	cut (0.169924)
	nco (0.161734)
	eli (0.151814)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	nca (0.136874)
	ese (0.126502)
	eru (0.120048)
	pgl (0.118483)