Non-Coding RNA Search

Ss1.1-rhlv30b_g19.5

Sequence:


               
               ACCAAAAATCAAGGCCCACATTAGAGGGCCTTAAATGTCCCAGGCATTGAGAATAGAGAT
AAGTGCAACAGCAACAAAATGAGGTTATAATTTAAACTGTTAACAGGTTTGCTAATTGCA
CATCCTTGGTACATTTTTCTAAATGCTTCCTGTTCCAGGCTTAGCTTCATTTTCCCTTGT
TTATGAAAGTACACATCAGGTGGTCAGTTTCCATAAAGTAGCCACCTAGTATTTCATTCA
TTCACTTAGCAAACATTTATTGAGTACCTACTATGTACTAGGCCATGTGCAAGGATACCT
AGATGAGTATTTTTGTCCCTGCCCTTATGGAGGTTATGGCATAAGCTGGACAAGTTCCTC
CTTAAGGAAAAAGTATTCAGAGGCACGAAGGGAAAGAGAAAAATTGACATCTGACATCAG
CATGTATTTACTGTGCAGATGGTTCCTATGAAGAGGCTCAAGTTTTTACACTGGTGGTAT
TCGTTTAAAATAGAGTATTAAAATTAATACTTCATGGTAAAACAAAATACTTTTATTTTT
AGAATGTTTAAATTGGAAGAGAGGCACCAGATGGTCCTTGTCCTGGTTGGGGTACTCTGA
TAAAGCAGGCCATGTGAGCATTGATACCTGAGATTCACTTGGCCTGGAATTAGTTGCGTT
ACAGCAGTGATTCTCAAACTTAGCATGCATCAGAATCCCCTGGAGGCCTTGTTAAACCAG
ATCGGTAGGCCCCACCCCCACAATTTTTCTGATTTAGGTCCTGAGTGTCCTGTTCGTAGT
AACTCCTCAGGTGATGCTGATGCTTCTGGTCCAGAGACCACACTTTGAGAACCACTGAAC
TGGAATACAGGTTAGGCAGGGATAAAATTCCTTAAGAGAAATGTAGTATGTTTTTAGAAA
GATACTATGAAGAATGTGGAGACTGAGCAAACCTTTTTACCAGGGCTATTATGTATGGAA
CGTGCACCTGACCCAAATCCATGGCCTTTGAGTAAATCACTAAAGATACTCTGCATTGTA
AGTTCAAGTTCAAGGGCCTGGCTTTGTACCTGGTTACTAGGTGTGTGTACATGGAACTTT
AGTAAACATCATGTGGCTTTAAACCTCTCTTTTGAACAGAAGACTATCCTCAATAATTTT
AATTGAAATTATGACAAGGAGGCTTACAACAAAGTTAAAATTAAAAACTTTTATCCAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAAAAATCAAGGCCCACATTAGAGGGCCTTAAATGTCCCAGGCATTGAGAATAGAGAT
AAGTGCAACAGCAACAAAATGAGGTTATAATTTAAACTGTTAACAGGTTTGCTAATTGCA
CATCCTTGGTACATTTTTCTAAATGCTTCCTGTTCCAGGCTTAGCTTCATTTTCCCTTGT
TTATGAAAGTACACATCAGGTGGTCAGTTTCCATAAAGTAGCCACCTAGTATTTCATTCA
TTCACTTAGCAAACATTTATTGAGTACCTACTATGTACTAGGCCATGTGCAAGGATACCT
AGATGAGTATTTTTGTCCCTGCCCTTATGGAGGTTATGGCATAAGCTGGACAAGTTCCTC
CTTAAGGAAAAAGTATTCAGAGGCACGAAGGGAAAGAGAAAAATTGACATCTGACATCAG
CATGTATTTACTGTGCAGATGGTTCCTATGAAGAGGCTCAAGTTTTTACACTGGTGGTAT
TCGTTTAAAATAGAGTATTAAAATTAATACTTCATGGTAAAACAAAATACTTTTATTTTT
AGAATGTTTAAATTGGAAGAGAGGCACCAGATGGTCCTTGTCCTGGTTGGGGTACTCTGA
TAAAGCAGGCCATGTGAGCATTGATACCTGAGATTCACTTGGCCTGGAATTAGTTGCGTT
ACAGCAGTGATTCTCAAACTTAGCATGCATCAGAATCCCCTGGAGGCCTTGTTAAACCAG
ATCGGTAGGCCCCACCCCCACAATTTTTCTGATTTAGGTCCTGAGTGTCCTGTTCGTAGT
AACTCCTCAGGTGATGCTGATGCTTCTGGTCCAGAGACCACACTTTGAGAACCACTGAAC
TGGAATACAGGTTAGGCAGGGATAAAATTCCTTAAGAGAAATGTAGTATGTTTTTAGAAA
GATACTATGAAGAATGTGGAGACTGAGCAAACCTTTTTACCAGGGCTATTATGTATGGAA
CGTGCACCTGACCCAAATCCATGGCCTTTGAGTAAATCACTAAAGATACTCTGCATTGTA
AGTTCAAGTTCAAGGGCCTGGCTTTGTACCTGGTTACTAGGTGTGTGTACATGGAACTTT
AGTAAACATCATGTGGCTTTAAACCTCTCTTTTGAACAGAAGACTATCCTCAATAATTTT
AATTGAAATTATGACAAGGAGGCTTACAACAAAGTTAAAATTAAAAACTTTTATCCAAAA
AAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               160-1198, gnl|bosTau2|chr11 (52841236-52842284)
               

               
               160-1198, gnl|Hg17|chr2 (27786371-27785340)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-1198, gnl|bosTau2|chr11 (52841236-52842284)
               

               
               160-1198, gnl|Hg17|chr2 (27786371-27785340)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ese (0.253004)
               

               
               fcc (0.197785)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.253004)
               

               
               fcc (0.197785)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	160-1198, gnl\|bosTau2\|chr11 (52841236-52842284)
	160-1198, gnl\|Hg17\|chr2 (27786371-27785340)

	ese (0.253004)
	fcc (0.197785)
	hlv (0.139256)
	kid (0.129735)
	thg (0.126791)
	bla (0.124347)
	tra (0.123092)
	jca (0.11396)
	eje (0.0988338)