Ss1.1-rhlv30b_p21.5
|
GAAGTGCTGGTATTTGTAGCGGGCGTGATGGCTTCAAGGTTACTCCGTGGAGCTGGAGCG
CTAGCCGCGCAGACCTTGAGGGCCCGAGGTCCCAATGGAGTCGCCGTTGTGCGGTCTATG
GCATCTGGAGGTGGTGTTCCTACTGATGAGGAGCAGGCGACTGGGCTGGAGAGGGAGGTC
ATGATGGCCGCCCGCAAGGGACTGGACCCATACAATATACTTGCCCCAAAGGCAGCCTCA
GGTACCAAGGAAGACCCTAATTTAGTCCCCTCCATCACCAACAAGCGGATAGTGGGCTGC
ATCTGTGAAGAAGACAACAGTACTGTCATCTGGTTCTGGGTGCACAAAGGCGAGACCCAG
CGATGCCCCAGCTGTGGAACCCATTATAAGCTGGTGTCGCACCAGCTGGCCCACTGAGCC
CCTGCACTAACACACTCAAGATGCGCTGGCAAGTTTCTTCCAATAAAGACTAGCCATTAC
ACTGGCTCCTCCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAGTGCTGGTATTTGTAGCGGGCGTGATGGCTTCAAGGTTACTCCGTGGAGCTGGAGCG
CTAGCCGCGCAGACCTTGAGGGCCCGAGGTCCCAATGGAGTCGCCGTTGTGCGGTCTATG
GCATCTGGAGGTGGTGTTCCTACTGATGAGGAGCAGGCGACTGGGCTGGAGAGGGAGGTC
ATGATGGCCGCCCGCAAGGGACTGGACCCATACAATATACTTGCCCCAAAGGCAGCCTCA
GGTACCAAGGAAGACCCTAATTTAGTCCCCTCCATCACCAACAAGCGGATAGTGGGCTGC
ATCTGTGAAGAAGACAACAGTACTGTCATCTGGTTCTGGGTGCACAAAGGCGAGACCCAG
CGATGCCCCAGCTGTGGAACCCATTATAAGCTGGTGTCGCACCAGCTGGCCCACTGAGCC
CCTGCACTAACACACTCAAGATGCGCTGGCAAGTTTCTTCCAATAAAGACTAGCCATTAC
ACTGGCTCCTCCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-132, gnl|bosTau2|chr11 (3315116-3315247) |
|
1-132, gnl|canFam2|chr10 (48108942-48109076) |
|
1-132, gnl|dasNov1|scaffold_70822 (6122-5988) |
|
1-132, gnl|echTel1|scaffold_282811 (6499-6615) |
|
1-132, gnl|Hg17|chr2 (97721041-97721172) |
|
1-132, gnl|hg17|chr7 (132869654-132869778) |
|
1-132, gnl|loxAfr1|scaffold_2778 (33043-33127) |
|
1-132, gnl|Mm7|chr1 (36932941-36933072) |
|
1-132, gnl|mm7|chr13 (20867304-20867438) |
|
1-132, gnl|monDom2|scaffold_1 (154753380-154753234) |
|
1-132, gnl|oryCun1|scaffold_29678 (1622-1538) |
|
1-132, gnl|panTro1|chr6_random (9171930-9171806) |
|
1-132, gnl|rheMac2|chr3 (171133863-171133988) |
|
1-132, gnl|rn3|chr9 (35627009-35626879) |
| |
|
305-497, gnl|bosTau2|chr11 (3317000-3317196) |
|
305-497, gnl|Hg17|chr2 (97722977-97723173) |
|
305-497, gnl|Mm7|chr1 (36934578-36934767) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-132, gnl|bosTau2|chr11 (3315116-3315247) |
|
1-132, gnl|canFam2|chr10 (48108942-48109076) |
|
1-132, gnl|dasNov1|scaffold_70822 (6122-5988) |
|
1-132, gnl|echTel1|scaffold_282811 (6499-6615) |
|
1-132, gnl|Hg17|chr2 (97721041-97721172) |
|
1-132, gnl|hg17|chr7 (132869654-132869778) |
|
1-132, gnl|loxAfr1|scaffold_2778 (33043-33127) |
|
1-132, gnl|Mm7|chr1 (36932941-36933072) |
|
1-132, gnl|mm7|chr13 (20867304-20867438) |
|
1-132, gnl|monDom2|scaffold_1 (154753380-154753234) |
|
1-132, gnl|oryCun1|scaffold_29678 (1622-1538) |
|
1-132, gnl|panTro1|chr6_random (9171930-9171806) |
|
1-132, gnl|rheMac2|chr3 (171133863-171133988) |
|
1-132, gnl|rn3|chr9 (35627009-35626879) |
| |
|
305-497, gnl|bosTau2|chr11 (3317000-3317196) |
|
305-497, gnl|Hg17|chr2 (97722977-97723173) |
|
305-497, gnl|Mm7|chr1 (36934578-36934767) |
|
hlv (5.57025) |
|
che (2.72628) |
|
nms (2.5663) |
|
cst (2.24058) |
|
duo (1.90081) |
|
jej (1.58275) |
|
cje (1.32188) |
|
hyp (1.14269) |
|
ton (1.053) |
|
ese (1.01202) |
|
fcc (0.988924) |
|
col (0.975039) |
|
ill (0.877963) |
|
amn (0.835422) |
|
cki (0.826173) |
|
nco (0.808669) |
|
eje (0.79067) |
|
nlu (0.766724) |
|
fty (0.703359) |
|
fbs (0.701385) |
|
fhi (0.678311) |
|
nmm (0.664011) |
|
mas (0.630915) |
|
eep (0.61282) |
|
cli (0.611247) |
|
sme (0.610874) |
|
ecc (0.575175) |
|
nep (0.551775) |
|
nca (0.547495) |
|
cov (0.528611) |
|
nje (0.49776) |
|
cag (0.453583) |
|
pty (0.428143) |
|
lnt (0.426925) |
|
ssp (0.406559) |
|
ute (0.398353) |
|
cmu (0.372787) |
|
cly (0.361925) |
|
ebs (0.354904) |
|
med (0.348756) |
|
mcp (0.341297) |
|
eye (0.341006) |
|
vin (0.332557) |
|
nbm (0.297974) |
|
fce (0.271592) |
|
pla (0.267344) |
|
eru (0.240096) |
|
cbl (0.229595) |
|
spc (0.226732) |
|
hea (0.204499) |
|
sin (0.174948) |
|
csp (0.161186) |
|
eli (0.151814) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
csk (0.140746) |
|
lyg (0.133103) |
|
thg (0.126791) |
|
hlv (5.57025) |
|
che (2.72628) |
|
nms (2.5663) |
|
cst (2.24058) |
|
duo (1.90081) |
|
jej (1.58275) |
|
cje (1.32188) |
|
hyp (1.14269) |
|
ton (1.053) |
|
ese (1.01202) |
|
fcc (0.988924) |
|
col (0.975039) |
|
ill (0.877963) |
|
amn (0.835422) |
|
cki (0.826173) |
|
nco (0.808669) |
|
eje (0.79067) |
|
nlu (0.766724) |
|
fty (0.703359) |
|
fbs (0.701385) |
|
fhi (0.678311) |
|
nmm (0.664011) |
|
mas (0.630915) |
|
eep (0.61282) |
|
cli (0.611247) |
|
sme (0.610874) |
|
ecc (0.575175) |
|
nep (0.551775) |
|
nca (0.547495) |
|
cov (0.528611) |
|
nje (0.49776) |
|
cag (0.453583) |
|
pty (0.428143) |
|
lnt (0.426925) |
|
ssp (0.406559) |
|
ute (0.398353) |
|
cmu (0.372787) |
|
cly (0.361925) |
|
ebs (0.354904) |
|
med (0.348756) |
|
mcp (0.341297) |
|
eye (0.341006) |
|
vin (0.332557) |
|
nbm (0.297974) |
|
fce (0.271592) |
|
pla (0.267344) |
|
eru (0.240096) |
|
cbl (0.229595) |
|
spc (0.226732) |
|
hea (0.204499) |
|
sin (0.174948) |
|
csp (0.161186) |
|
eli (0.151814) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
csk (0.140746) |
|
lyg (0.133103) |
|
thg (0.126791) |
