Non-Coding RNA Search

Ss1.1-rhlv31b_l4.5

Sequence:


               
               TTGAAGGGAAATGAAATGGAAATGAAGGGAACTTTTCACTAACCCCACTGTTGCATGTTT
TGCATGGCACCTGCCCCAGGGCCCCTGCCCGCTTCAGCATCGACTCTCACAAAGTACCTG
GTGCTGTCTCTGGGCTGTGCTGGTGAGAGAGCACAGAGGCTGCGATGGCTGCCACAGCCT
GGGCAGCCCCTCTCCAACTGGGGACAGCCCTGCTCCAAGAACACACATACCAGCTCCTCA
CAGTTCCCTGCTCTTTGTTGTTTTGTTTTGTTTTTTCTTTCAGGGACCGTAGGCCACAGT
GATTTTTCTTTTCCCCGGTTTAATTAGGCAGTACCCTTGTTAATTGCCCTTTGGCAACTA
AGTTAACCATGTGCTTCCAAGACACTAAATCAGGAAAACCTAAAGGGCAATATTTTTCAC
TTGGGGCAGAAAGAAAGGAGCAGCAGAGGACTAGATTTAGCACCTCTTAAAGGAGAAATT
CTTGCTTCTTCCGAAATCTTTCAAGCCATGCTTTGTGTGTGTGCCAGTGGACTTGCTCAA
GGACAGGGTTCAGCTGGCCCGGGCTGTGTGCCCGGGCCGAGCCATCCCTTCACTAGAGCT
GGTGGCTCGCATGGCGCAGCCCCCGAGGCGGGAACAGCACGAGCTTCCACGTCCCCTCTG
CCTGCTCCGCTGGCTCCGGTGAATCATTAGAATGGTTGCTTGTTCGCTTCCTCTTAGGTC
GCTCTTGTACATGGAGCCTCAACTAGACACTTTTTCAGATTTTATAGGCTTTTGTTTTAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGAAGGGAAATGAAATGGAAATGAAGGGAACTTTTCACTAACCCCACTGTTGCATGTTT
TGCATGGCACCTGCCCCAGGGCCCCTGCCCGCTTCAGCATCGACTCTCACAAAGTACCTG
GTGCTGTCTCTGGGCTGTGCTGGTGAGAGAGCACAGAGGCTGCGATGGCTGCCACAGCCT
GGGCAGCCCCTCTCCAACTGGGGACAGCCCTGCTCCAAGAACACACATACCAGCTCCTCA
CAGTTCCCTGCTCTTTGTTGTTTTGTTTTGTTTTTTCTTTCAGGGACCGTAGGCCACAGT
GATTTTTCTTTTCCCCGGTTTAATTAGGCAGTACCCTTGTTAATTGCCCTTTGGCAACTA
AGTTAACCATGTGCTTCCAAGACACTAAATCAGGAAAACCTAAAGGGCAATATTTTTCAC
TTGGGGCAGAAAGAAAGGAGCAGCAGAGGACTAGATTTAGCACCTCTTAAAGGAGAAATT
CTTGCTTCTTCCGAAATCTTTCAAGCCATGCTTTGTGTGTGTGCCAGTGGACTTGCTCAA
GGACAGGGTTCAGCTGGCCCGGGCTGTGTGCCCGGGCCGAGCCATCCCTTCACTAGAGCT
GGTGGCTCGCATGGCGCAGCCCCCGAGGCGGGAACAGCACGAGCTTCCACGTCCCCTCTG
CCTGCTCCGCTGGCTCCGGTGAATCATTAGAATGGTTGCTTGTTCGCTTCCTCTTAGGTC
GCTCTTGTACATGGAGCCTCAACTAGACACTTTTTCAGATTTTATAGGCTTTTGTTTTAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               256-415, + strand, RNAz p=0.997139
               

               
               501-628, - strand, RNAz p=0.986996

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-415, + strand, RNAz p=0.997139
               

               
               501-628, - strand, RNAz p=0.986996

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               511-624, + strand, RNAmicro p=0.986506

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               511-624, + strand, RNAmicro p=0.986506

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of NM_002959, +
               

               
               5' of NM_002959, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002959, +
               

               
               5' of NM_002959, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               139-628, gnl|bosTau2|chr3 (30473407-30473883)
               

               
               139-628, gnl|canFam2|chr6 (45577399-45576277)
               

               
               139-628, gnl|dasNov1|scaffold_2090 (14279-15365)
               

               
               139-628, gnl|echTel1|scaffold_289808 (30002-30974)
               

               
               139-628, gnl|hg17|chr1 (109567063-109568195)
               

               
               139-628, gnl|Hg17|chr1 (109568260-109567773)
               

               
               139-628, gnl|loxAfr1|scaffold_1838 (135947-137041)
               

               
               139-628, gnl|mm7|chr3 (108177122-108176059)
               

               
               139-628, gnl|Mm7|chr3 (108175991-108176429)
               

               
               139-628, gnl|monDom2|scaffold_0 (7330637-7329534)
               

               
               139-628, gnl|oryCun1|scaffold_206851 (75155-73984)
               

               
               139-628, gnl|panTro1|chr1 (108492013-108493148)
               

               
               139-628, gnl|rheMac2|chr1 (112367874-112368997)
               

               
               139-628, gnl|rn3|chr2 (203891730-203890650)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-628, gnl|bosTau2|chr3 (30473407-30473883)
               

               
               139-628, gnl|canFam2|chr6 (45577399-45576277)
               

               
               139-628, gnl|dasNov1|scaffold_2090 (14279-15365)
               

               
               139-628, gnl|echTel1|scaffold_289808 (30002-30974)
               

               
               139-628, gnl|hg17|chr1 (109567063-109568195)
               

               
               139-628, gnl|Hg17|chr1 (109568260-109567773)
               

               
               139-628, gnl|loxAfr1|scaffold_1838 (135947-137041)
               

               
               139-628, gnl|mm7|chr3 (108177122-108176059)
               

               
               139-628, gnl|Mm7|chr3 (108175991-108176429)
               

               
               139-628, gnl|monDom2|scaffold_0 (7330637-7329534)
               

               
               139-628, gnl|oryCun1|scaffold_206851 (75155-73984)
               

               
               139-628, gnl|panTro1|chr1 (108492013-108493148)
               

               
               139-628, gnl|rheMac2|chr1 (112367874-112368997)
               

               
               139-628, gnl|rn3|chr2 (203891730-203890650)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tes (0.207814)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	256-415, + strand, RNAz p=0.997139
	501-628, - strand, RNAz p=0.986996

	139-628, gnl\|bosTau2\|chr3 (30473407-30473883)
	139-628, gnl\|canFam2\|chr6 (45577399-45576277)
	139-628, gnl\|dasNov1\|scaffold_2090 (14279-15365)
	139-628, gnl\|echTel1\|scaffold_289808 (30002-30974)
	139-628, gnl\|hg17\|chr1 (109567063-109568195)
	139-628, gnl\|Hg17\|chr1 (109568260-109567773)
	139-628, gnl\|loxAfr1\|scaffold_1838 (135947-137041)
	139-628, gnl\|mm7\|chr3 (108177122-108176059)
	139-628, gnl\|Mm7\|chr3 (108175991-108176429)
	139-628, gnl\|monDom2\|scaffold_0 (7330637-7329534)
	139-628, gnl\|oryCun1\|scaffold_206851 (75155-73984)
	139-628, gnl\|panTro1\|chr1 (108492013-108493148)
	139-628, gnl\|rheMac2\|chr1 (112367874-112368997)
	139-628, gnl\|rn3\|chr2 (203891730-203890650)

	tes (0.207814)
	nep (0.183925)
	fbs (0.175346)
	pty (0.142714)
	hlv (0.139256)
	ebs (0.118301)
	cty (0.10408)