Non-Coding RNA Search

Ss1.1-rhlv31b_n18.5

Sequence:


               
               TCAGTATTGTAATTCACCGTTTAGAATTCTAGGTCCTTTATGGCGAGAAGCCCACATAGT
TTAAACCGCACGTCCGGAGGCGCGTGGTGGCCTCGCCACTTGGCCTGACGGTCCACGGGT
CCACGGCCGTGAGGCGTCCCCGTGGGCACGCAGGCTGACCGGGGCTCTCGCCTCTGTCCT
CCCTCCAGGGCTGCAAAGGAGCACTTGCTGCGCGCGACTTGGGTTGCGGGACCCGCCTCG
CGCGCTGTCATCTGGTCCCTCTGCCTGCTTCCGTGGTGGCTTGTTGAACGCCCTGCTGGT
GTCACGTAGGCAAGGGCGTGACCGAGGGCGTGACGCGTTGAGTCTGAAAGGTCATGAGGG
AGACTCTGACCCTGCTCGGCTTGCCCGCCTGTCACAGTGGACGGGACTGTCGAGCCTGAG
TGGGTTGGCCGTCCTTGCCTTTCCAAAGTGCAGGGGACGCCCAAAGAATGAGGCAGGTGA
CACTGAAAGCCATGGGTTCTGAAAAGGCTCCCCTGCCGAGACGTCCCAAGGTTCTGAGTC
GAAGGGAGGCCCTTTGATCAACACTCACCAACCACCACCTGTGCTGGTTGAGGCCCGGCT
GCCGGAGGGAGCCCGGTCAGTCCGTCCCCGTGCTGTGACAAGCCCCCCACGTGGGTACAC
GTTCGTAGATGCACAGAGACAAGGCTCTGGTACTGAAAGACCTCTGTGTGCTTAAGAATC
TTCACAGCTTCTATTGGACATATTTTCTTTTTAGGAATGAAGGAAAATTCTCCCATTTTG
AGCCATTCTTTTATGTCAGTTCTACAAAATTGCATGTAACTTTATAAATATTTTTAAAAG
ATATAGTTTTGTAAATATTTAATATTCTGCTAATTTGATTTTGAATTGTAAATGTCAAGT
ATTCTGTTTTTGGGGTTTTTATGTTTTATTATATACTTTGTTAAAAGAAAAATTGTACAT
TTTTAGAATGTTTTTATGAGTAAATTTAATGTACTGAAAATAAAAATTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGTATTGTAATTCACCGTTTAGAATTCTAGGTCCTTTATGGCGAGAAGCCCACATAGT
TTAAACCGCACGTCCGGAGGCGCGTGGTGGCCTCGCCACTTGGCCTGACGGTCCACGGGT
CCACGGCCGTGAGGCGTCCCCGTGGGCACGCAGGCTGACCGGGGCTCTCGCCTCTGTCCT
CCCTCCAGGGCTGCAAAGGAGCACTTGCTGCGCGCGACTTGGGTTGCGGGACCCGCCTCG
CGCGCTGTCATCTGGTCCCTCTGCCTGCTTCCGTGGTGGCTTGTTGAACGCCCTGCTGGT
GTCACGTAGGCAAGGGCGTGACCGAGGGCGTGACGCGTTGAGTCTGAAAGGTCATGAGGG
AGACTCTGACCCTGCTCGGCTTGCCCGCCTGTCACAGTGGACGGGACTGTCGAGCCTGAG
TGGGTTGGCCGTCCTTGCCTTTCCAAAGTGCAGGGGACGCCCAAAGAATGAGGCAGGTGA
CACTGAAAGCCATGGGTTCTGAAAAGGCTCCCCTGCCGAGACGTCCCAAGGTTCTGAGTC
GAAGGGAGGCCCTTTGATCAACACTCACCAACCACCACCTGTGCTGGTTGAGGCCCGGCT
GCCGGAGGGAGCCCGGTCAGTCCGTCCCCGTGCTGTGACAAGCCCCCCACGTGGGTACAC
GTTCGTAGATGCACAGAGACAAGGCTCTGGTACTGAAAGACCTCTGTGTGCTTAAGAATC
TTCACAGCTTCTATTGGACATATTTTCTTTTTAGGAATGAAGGAAAATTCTCCCATTTTG
AGCCATTCTTTTATGTCAGTTCTACAAAATTGCATGTAACTTTATAAATATTTTTAAAAG
ATATAGTTTTGTAAATATTTAATATTCTGCTAATTTGATTTTGAATTGTAAATGTCAAGT
ATTCTGTTTTTGGGGTTTTTATGTTTTATTATATACTTTGTTAAAAGAAAAATTGTACAT
TTTTAGAATGTTTTTATGAGTAAATTTAATGTACTGAAAATAAAAATTAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               685-1020, gnl|bosTau2|chr1 (99852619-99852969)
               

               
               685-1020, gnl|Hg17|chr16 (85997683-85997357)
               

               
               685-1020, gnl|Mm7|chr8 (120241407-120241107)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               685-1020, gnl|bosTau2|chr1 (99852619-99852969)
               

               
               685-1020, gnl|Hg17|chr16 (85997683-85997357)
               

               
               685-1020, gnl|Mm7|chr8 (120241407-120241107)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               cte (0.87822)
               

               
               vin (0.665115)
               

               
               cut (0.339847)
               

               
               csk (0.281492)
               

               
               ssp (0.271039)
               

               
               ton (0.1755)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               vin (0.665115)
               

               
               cut (0.339847)
               

               
               csk (0.281492)
               

               
               ssp (0.271039)
               

               
               ton (0.1755)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               spc (0.113366)

	685-1020, gnl\|bosTau2\|chr1 (99852619-99852969)
	685-1020, gnl\|Hg17\|chr16 (85997683-85997357)
	685-1020, gnl\|Mm7\|chr8 (120241407-120241107)

	cte (0.87822)
	vin (0.665115)
	cut (0.339847)
	csk (0.281492)
	ssp (0.271039)
	ton (0.1755)
	hlv (0.139256)
	che (0.136314)
	ute (0.132784)
	kid (0.129735)
	spc (0.113366)