Non-Coding RNA Search

Ss1.1-rhlv31b_o23.5

Sequence:


               
               CCCCCGGCCGCTCGTCCCCGCCGCGCCGCCGTCCTCGCCCCCGGGCTCGCCCTTGGTCCC
CGGAGGCCGCGAAAGGGTGCGGGAGACGCGGAGCCGGAGGAGGAGGCGCAGCCGCTGCCC
AAGCCGCAGCCGCAGCCGCAGCCGGAGCCCGAGCCGCGGGGCCGGCGCGAAGATGCACAC
GACCCAGAAGGACACGACGTACACCAAGATCTTCGTCGGGGGGCTGCCCTACCACACCAC
CGACGCCAGCCTGCGCAAGTACTTCGAGGTCTTCGGCGAGATCGAGGAGGCGGTGGTCAT
CACCGACCGGCAGACCGGCAAGTCCCGGGGCTATGGATTTGTCACCATGGCTGACCGCGC
TGCTGCCGAAAGAGCCTGCAAGGATCCCAACCCCATCATTGACGGCAGGAAGGCCAATGT
GAATCTGGCGTACTTGGGAGCAAAACCAAGGATCATGCAACCAGGTTTTGCCTTTGGTGT
TCAACAGCTTCATCCAGCCCTTATACAAAGACCTTTTGGGATACCTGCCCACTATGTCTA
TCCGCAGGCTTTTGTGCAGCCTGGAGTGGTCATCCCCCACGTCCAGCCGGCCGCCGCTGC
CGCCTCCACCACGCCGTACATTGATTACACGGGAGCTGCGTACGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCGGCCGCTCGTCCCCGCCGCGCCGCCGTCCTCGCCCCCGGGCTCGCCCTTGGTCCC
CGGAGGCCGCGAAAGGGTGCGGGAGACGCGGAGCCGGAGGAGGAGGCGCAGCCGCTGCCC
AAGCCGCAGCCGCAGCCGCAGCCGGAGCCCGAGCCGCGGGGCCGGCGCGAAGATGCACAC
GACCCAGAAGGACACGACGTACACCAAGATCTTCGTCGGGGGGCTGCCCTACCACACCAC
CGACGCCAGCCTGCGCAAGTACTTCGAGGTCTTCGGCGAGATCGAGGAGGCGGTGGTCAT
CACCGACCGGCAGACCGGCAAGTCCCGGGGCTATGGATTTGTCACCATGGCTGACCGCGC
TGCTGCCGAAAGAGCCTGCAAGGATCCCAACCCCATCATTGACGGCAGGAAGGCCAATGT
GAATCTGGCGTACTTGGGAGCAAAACCAAGGATCATGCAACCAGGTTTTGCCTTTGGTGT
TCAACAGCTTCATCCAGCCCTTATACAAAGACCTTTTGGGATACCTGCCCACTATGTCTA
TCCGCAGGCTTTTGTGCAGCCTGGAGTGGTCATCCCCCACGTCCAGCCGGCCGCCGCTGC
CGCCTCCACCACGCCGTACATTGATTACACGGGAGCTGCGTACGCCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49114954|gb|AAH72812.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49114954|gb|AAH72812.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               341-466, gnl|bosTau2|chr23 (35104640-35104515)
               

               
               341-466, gnl|Hg17|chr6 (17391015-17391140)
               

               
               341-466, gnl|Mm7|chr13 (45902374-45902499)
               


               
               519-648, gnl|bosTau2|chr23 (35096464-35096335)
               

               
               519-648, gnl|Hg17|chr6 (17399965-17400094)
               

               
               519-648, gnl|Mm7|chr13 (45911052-45911181)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               341-466, gnl|bosTau2|chr23 (35104640-35104515)
               

               
               341-466, gnl|Hg17|chr6 (17391015-17391140)
               

               
               341-466, gnl|Mm7|chr13 (45902374-45902499)
               


               
               519-648, gnl|bosTau2|chr23 (35096464-35096335)
               

               
               519-648, gnl|Hg17|chr6 (17399965-17400094)
               

               
               519-648, gnl|Mm7|chr13 (45911052-45911181)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.278513)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)

	341-466, gnl\|bosTau2\|chr23 (35104640-35104515)
	341-466, gnl\|Hg17\|chr6 (17391015-17391140)
	341-466, gnl\|Mm7\|chr13 (45902374-45902499)

	519-648, gnl\|bosTau2\|chr23 (35096464-35096335)
	519-648, gnl\|Hg17\|chr6 (17399965-17400094)
	519-648, gnl\|Mm7\|chr13 (45911052-45911181)