Ss1.1-rhlv31b_p4.5
|
CGACTCCCATGCATCGGCTCATAGCCCGGAGACAAGCTGAAGCAAATAAGCAACATGTGA
GATGTCAGAAATGCTTGGAATTTGGACACTGGACTTATGAATGCACAGGGAAAAGAAAGT
ACCTCCATAGGCCTTCAAGAACAGCAGAACTAAAGAAAGCTTTAAAAGAAAAGGAAAACA
GATTATTATTACAACAAAGCATTGGAGAAACTAATGTAGAAAGAAAGACCAAGAAAAAAA
GGTCTAAGAGTGTGACCAGTTCCAGTAGCAACAGCAGTGACAGTTCAGCCAGTGATTCTT
CATCAGAGAGTGAAGAGTCGTCTACCTCATCCTCCTCAGAGGACAGTGACACTGATGAAA
GCTCCTCCAGTTCTTCATCTTCATCCTCCACCAGCTCTTCCTCATCCTCTGATTCAGACT
CAGATTCCAGCTCTTCCAGTAGCAGCAGCACCAGCACAGATAGCAGCTCTGAAGATGAAC
CGTCACGGAAGAAGAAAAAGAAATAGAATTGCTCCAACCGTACTGGACTGATGGACTGAA
AACTTTAATGTGATTCTCAGAAGGGAATTTAGAATGTGTTAAGGCCAAATAGATTAACTG
GTCAAAATTTCTGGAGTCCAAAAGTTTCTAAATGTTTTTCATTGTAAGAACATAAAGAGT
ATTAGTAATTGATTATATTATAAAGACTTTTTTAAGGGTAAATCTTGTTTTTCTTTTTTA
TCTTTAAAATATATCTCTAAAATTAATCACAGCTGAAATCCAATAAATTTATGTTTTCTC
CCTGTGAAATAAATGCCATACTTTATGATATGTTAGTGCTATGTACCAGCCATGTTTTTT
GGATAATGCATCAAAATATCTGACAGTGAATTTTTAAAGCTTTTGGCTGTATGTTATTAT
GTAAGATTTAATACATTGTTACTATAAGCTTAGGAGTTTTCCTACTGTTAATAAATGTGG
TCTATTTTTATGTTTATGTTCAGAAAGTTACTCTGACTTCTTGTCCTAAATTGAAAGTTC
AAGGAACCTATTAATAAATTTATACCTTTTGGATGGTACAAATTTCTAGTTACTGTATCA
TATCATTCATTTTTTTCTGGTTCTTAGAGTTACCCTTTTCCGAGGAAAATTATTCTAGAG
GAACTTTTAAAAGGGAACAAAAATTCTTAAACTATATAGGGATCTAATCTTGGTTTTCTG
TTGATAAATCCAGTGTATCAAAAAAGAAAACAGTCATTTGAAAAACTAAGTTGAGTTCCC
ATCCTGGCTTCGTGGGTTATGAACCCAACTAGTGTCCATGAGGATGTGGGATTGATCCCT
GGTCTCAATGAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGACTCCCATGCATCGGCTCATAGCCCGGAGACAAGCTGAAGCAAATAAGCAACATGTGA
GATGTCAGAAATGCTTGGAATTTGGACACTGGACTTATGAATGCACAGGGAAAAGAAAGT
ACCTCCATAGGCCTTCAAGAACAGCAGAACTAAAGAAAGCTTTAAAAGAAAAGGAAAACA
GATTATTATTACAACAAAGCATTGGAGAAACTAATGTAGAAAGAAAGACCAAGAAAAAAA
GGTCTAAGAGTGTGACCAGTTCCAGTAGCAACAGCAGTGACAGTTCAGCCAGTGATTCTT
CATCAGAGAGTGAAGAGTCGTCTACCTCATCCTCCTCAGAGGACAGTGACACTGATGAAA
GCTCCTCCAGTTCTTCATCTTCATCCTCCACCAGCTCTTCCTCATCCTCTGATTCAGACT
CAGATTCCAGCTCTTCCAGTAGCAGCAGCACCAGCACAGATAGCAGCTCTGAAGATGAAC
CGTCACGGAAGAAGAAAAAGAAATAGAATTGCTCCAACCGTACTGGACTGATGGACTGAA
AACTTTAATGTGATTCTCAGAAGGGAATTTAGAATGTGTTAAGGCCAAATAGATTAACTG
GTCAAAATTTCTGGAGTCCAAAAGTTTCTAAATGTTTTTCATTGTAAGAACATAAAGAGT
ATTAGTAATTGATTATATTATAAAGACTTTTTTAAGGGTAAATCTTGTTTTTCTTTTTTA
TCTTTAAAATATATCTCTAAAATTAATCACAGCTGAAATCCAATAAATTTATGTTTTCTC
CCTGTGAAATAAATGCCATACTTTATGATATGTTAGTGCTATGTACCAGCCATGTTTTTT
GGATAATGCATCAAAATATCTGACAGTGAATTTTTAAAGCTTTTGGCTGTATGTTATTAT
GTAAGATTTAATACATTGTTACTATAAGCTTAGGAGTTTTCCTACTGTTAATAAATGTGG
TCTATTTTTATGTTTATGTTCAGAAAGTTACTCTGACTTCTTGTCCTAAATTGAAAGTTC
AAGGAACCTATTAATAAATTTATACCTTTTGGATGGTACAAATTTCTAGTTACTGTATCA
TATCATTCATTTTTTTCTGGTTCTTAGAGTTACCCTTTTCCGAGGAAAATTATTCTAGAG
GAACTTTTAAAAGGGAACAAAAATTCTTAAACTATATAGGGATCTAATCTTGGTTTTCTG
TTGATAAATCCAGTGTATCAAAAAAGAAAACAGTCATTTGAAAAACTAAGTTGAGTTCCC
ATCCTGGCTTCGTGGGTTATGAACCCAACTAGTGTCCATGAGGATGTGGGATTGATCCCT
GGTCTCAATGAG
|
|
gi|47188229|emb|CAG14138.1| |
Protein identifier
|
gi|47188229|emb|CAG14138.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
38-199, gnl|bosTau2|chr7 (30417695-30417856) |
|
38-199, gnl|canFam2|chr14 (57742763-57742930) |
|
38-199, gnl|danRer3|chr21 (39716246-39716401) |
|
38-199, gnl|dasNov1|scaffold_6753 (56527-56683) |
|
38-199, gnl|echTel1|scaffold_119087 (508-666) |
|
38-199, gnl|fr1|chrUn (207327067-207327201) |
|
38-199, gnl|galGal2|chr13 (16161767-16161927) |
|
38-199, gnl|hg17|chr3 (183067449-183067604) |
|
38-199, gnl|Hg17|chr5 (132370511-132370350) |
|
38-199, gnl|mm7|chr3 (140728358-140728515) |
|
38-199, gnl|Mm7|chr3 (140728514-140728357) |
|
38-199, gnl|monDom2|scaffold_6 (92244945-92244785) |
|
38-199, gnl|oryCun1|scaffold_206175 (49016-48855) |
|
38-199, gnl|panTro1|chr2 (186855253-186855406) |
|
38-199, gnl|rheMac2|chr6 (129406538-129406699) |
|
38-199, gnl|rn3|chr11 (54245723-54245564) |
|
38-199, gnl|tetNig1|chrUn_random (156514637-156514770) |
|
38-199, gnl|xenTro1|scaffold_473 (911275-911435) |
| |
|
237-678, gnl|bosTau2|chr7 (30421379-30421823) |
|
237-678, gnl|Hg17|chr5 (132362446-132362009) |
|
237-678, gnl|Mm7|chr3 (140728317-140727825) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
38-199, gnl|bosTau2|chr7 (30417695-30417856) |
|
38-199, gnl|canFam2|chr14 (57742763-57742930) |
|
38-199, gnl|danRer3|chr21 (39716246-39716401) |
|
38-199, gnl|dasNov1|scaffold_6753 (56527-56683) |
|
38-199, gnl|echTel1|scaffold_119087 (508-666) |
|
38-199, gnl|fr1|chrUn (207327067-207327201) |
|
38-199, gnl|galGal2|chr13 (16161767-16161927) |
|
38-199, gnl|hg17|chr3 (183067449-183067604) |
|
38-199, gnl|Hg17|chr5 (132370511-132370350) |
|
38-199, gnl|mm7|chr3 (140728358-140728515) |
|
38-199, gnl|Mm7|chr3 (140728514-140728357) |
|
38-199, gnl|monDom2|scaffold_6 (92244945-92244785) |
|
38-199, gnl|oryCun1|scaffold_206175 (49016-48855) |
|
38-199, gnl|panTro1|chr2 (186855253-186855406) |
|
38-199, gnl|rheMac2|chr6 (129406538-129406699) |
|
38-199, gnl|rn3|chr11 (54245723-54245564) |
|
38-199, gnl|tetNig1|chrUn_random (156514637-156514770) |
|
38-199, gnl|xenTro1|scaffold_473 (911275-911435) |
| |
|
237-678, gnl|bosTau2|chr7 (30421379-30421823) |
|
237-678, gnl|Hg17|chr5 (132362446-132362009) |
|
237-678, gnl|Mm7|chr3 (140728317-140727825) |
|
sme (0.305437) |
|
aor (0.195274) |
|
fat (0.147427) |
|
hlv (0.139256) |
|
che (0.136314) |
|
pla (0.133672) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
ldo (0.0970026) |
|
sme (0.305437) |
|
aor (0.195274) |
|
fat (0.147427) |
|
hlv (0.139256) |
|
che (0.136314) |
|
pla (0.133672) |
|
cbl (0.114797) |
|
cty (0.10408) |
|
ldo (0.0970026) |
