Non-Coding RNA Search

Ss1.1-rhlv32b_d24.5

Sequence:


               
               CTGAGAGGAGCCAGGAACCGCTGTTGCTGGGGAGGAGAGGGAGCGGCAAGATGGTTTACA
TCTCGAACGGACAAGTGTTGGACAGCAGGAGTCAGTCCCCATGGAGATTATCCTTTATAA
CAGATTTTTTCTGGGGAATAGCTGAATTCGTGGTTTTGTTTTTCAGAACTCTGCTTCAGC
AAGATGTGAAAAAGAGAAGAGGCTATGGAGGCTCATCTGATTCCAGATACGATGATGGAA
GAGGGCCACCAGGAAACCCCCCTAGAAGAATGGGTCGAATTAATCATCTCCGTGGCCCTA
ATCCTCCTCCAATGGCCGGTGGATGAGGAAGGTAAATGTCTGCTCTAAGAAGCAGACAAC
TAGACATGCACATTTCTAGCAGAAGGAAACCATCAAGAAATGGAGTGATGACCACGCTGG
ACAAGTTAGATGAATGTGTATGTCTCAACAAGGATTGCTCTGTGTCCTCACAGATGAATG
AGGTCTTGCTGGGAATTCCCTCCACGGGGATCTGGCATGACTGATAATGCAGTTCTATAA
ATGCACATTTTTGTCTCATCTTTGTATCATTTATGAAAGTATTAATATAGTTTTAATAAG
TAAATATTTTTAGGTTACAAAACTGACTTCTCATCTTTATATGATTAAAATACAAAAGGC
TCCAAATTTGAAGAAAAATAAAAGGCTATGTATTGAGTACTGTTAGTGTCACCTTTTTGA
ACTTCCGAAATACTGTTCATTGTGTTTTCTTGTTCTCATTTATAAATAAATCACATTGTA
TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGAGGAGCCAGGAACCGCTGTTGCTGGGGAGGAGAGGGAGCGGCAAGATGGTTTACA
TCTCGAACGGACAAGTGTTGGACAGCAGGAGTCAGTCCCCATGGAGATTATCCTTTATAA
CAGATTTTTTCTGGGGAATAGCTGAATTCGTGGTTTTGTTTTTCAGAACTCTGCTTCAGC
AAGATGTGAAAAAGAGAAGAGGCTATGGAGGCTCATCTGATTCCAGATACGATGATGGAA
GAGGGCCACCAGGAAACCCCCCTAGAAGAATGGGTCGAATTAATCATCTCCGTGGCCCTA
ATCCTCCTCCAATGGCCGGTGGATGAGGAAGGTAAATGTCTGCTCTAAGAAGCAGACAAC
TAGACATGCACATTTCTAGCAGAAGGAAACCATCAAGAAATGGAGTGATGACCACGCTGG
ACAAGTTAGATGAATGTGTATGTCTCAACAAGGATTGCTCTGTGTCCTCACAGATGAATG
AGGTCTTGCTGGGAATTCCCTCCACGGGGATCTGGCATGACTGATAATGCAGTTCTATAA
ATGCACATTTTTGTCTCATCTTTGTATCATTTATGAAAGTATTAATATAGTTTTAATAAG
TAAATATTTTTAGGTTACAAAACTGACTTCTCATCTTTATATGATTAAAATACAAAAGGC
TCCAAATTTGAAGAAAAATAAAAGGCTATGTATTGAGTACTGTTAGTGTCACCTTTTTGA
ACTTCCGAAATACTGTTCATTGTGTTTTCTTGTTCTCATTTATAAATAAATCACATTGTA
TTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               SELK_RAT

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               SELK_RAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               213-556, + strand, RNAz p=0.992215

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-556, + strand, RNAz p=0.992215

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               58-604, gnl|bosTau2|chr1 (31730374-31730934)
               

               
               58-604, gnl|Hg17|chr6 (132182917-132182410)
               

               
               58-604, gnl|Mm7|chr11 (23510725-23510190)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-604, gnl|bosTau2|chr1 (31730374-31730934)
               

               
               58-604, gnl|Hg17|chr6 (132182917-132182410)
               

               
               58-604, gnl|Mm7|chr11 (23510725-23510190)

Expressed library(ies): 48 entry(ies)

More info

Expressed library(ies): 48 entry(ies)

Help | Less info


               
               cbe (1.43541)
               

               
               aor (1.17165)
               

               
               cte (1.17096)
               

               
               gul (1.06553)
               

               
               pgl (0.592417)
               

               
               kid (0.518941)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               bla (0.497389)
               

               
               ldo (0.485013)
               

               
               ski (0.440205)
               

               
               pty (0.428143)
               

               
               hlv (0.417769)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               sug (0.381874)
               

               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               nco (0.323468)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               ova (0.258264)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 48 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.43541)
               

               
               aor (1.17165)
               

               
               cte (1.17096)
               

               
               gul (1.06553)
               

               
               pgl (0.592417)
               

               
               kid (0.518941)
               

               
               ret (0.514933)
               

               
               pro (0.512033)
               

               
               thg (0.507164)
               

               
               bla (0.497389)
               

               
               ldo (0.485013)
               

               
               ski (0.440205)
               

               
               pty (0.428143)
               

               
               hlv (0.417769)
               

               
               ssp (0.406559)
               

               
               ste (0.405625)
               

               
               lyg (0.399308)
               

               
               sug (0.381874)
               

               
               fbs (0.350693)
               

               
               spc (0.340097)
               

               
               nco (0.323468)
               

               
               sme (0.305437)
               

               
               lun (0.300978)
               

               
               bfe (0.299715)
               

               
               fat (0.294855)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               ova (0.258264)
               

               
               pan (0.23596)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	58-604, gnl\|bosTau2\|chr1 (31730374-31730934)
	58-604, gnl\|Hg17\|chr6 (132182917-132182410)
	58-604, gnl\|Mm7\|chr11 (23510725-23510190)

	cbe (1.43541)
	aor (1.17165)
	cte (1.17096)
	gul (1.06553)
	pgl (0.592417)
	kid (0.518941)
	ret (0.514933)
	pro (0.512033)
	thg (0.507164)
	bla (0.497389)
	ldo (0.485013)
	ski (0.440205)
	pty (0.428143)
	hlv (0.417769)
	ssp (0.406559)
	ste (0.405625)
	lyg (0.399308)
	sug (0.381874)
	fbs (0.350693)
	spc (0.340097)
	nco (0.323468)
	sme (0.305437)
	lun (0.300978)
	bfe (0.299715)
	fat (0.294855)
	cga (0.279096)
	che (0.272628)
	ova (0.258264)
	pan (0.23596)
	mas (0.210305)
	hea (0.204499)
	fli (0.202881)
	jej (0.197844)
	sag (0.182715)
	sin (0.174948)
	rec (0.17307)
	mcp (0.170648)
	csp (0.161186)
	fco (0.157208)
	cli (0.152812)
	cag (0.151194)
	lnt (0.142308)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	jca (0.11396)
	cty (0.10408)
	nbm (0.0993246)