Non-Coding RNA Search

Ss1.1-rhlv32b_m8.5

Sequence:


               
               GGGAGGCCCTGGGGCCGGGGCTGGGCTGCGAGCTGCCAGCCCCACAACAGGCCGGGCAGG
CGGGCGCCCTGGGCTCTGACCCCCGCCTTGCTCCTGGCTTGCCTCCTGGGGGCCGGCGAG
TCAGGCCCCCACGCTGCAGAGCCCCGGAGGGGGAGGAGCGGAGGCGGACAGAGAGCCCCG
AGGGCTGCGGACAGACTGCGTCCGTCTGGGGGAAGGCCCGGGTCGGGGGCGTGCTGGGGC
CTCTCGGCCGAAGCCGGTGTGTCAGCCAGCTGTCGATACCAGAGCCACGGTAGGTAATCC
ACATTGGATGTCGATAAGGACCACGGGAGTATTTAAAAGAGAGAAAAGTATATATATATA
AAATTATATACACATTTTATCGTACAGATTTTCATAACTTTTCTTCCTGTTTGATACTGT
AAATCTCTATTAGAGCAGAGCTGCCTGGGCCTGGGGGTGGCTGCAGTGGGGTCGGCTGCT
CGCCACCTGCTTCCCTCGGGCCTCAGCCCTGCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGCCCTGGGGCCGGGGCTGGGCTGCGAGCTGCCAGCCCCACAACAGGCCGGGCAGG
CGGGCGCCCTGGGCTCTGACCCCCGCCTTGCTCCTGGCTTGCCTCCTGGGGGCCGGCGAG
TCAGGCCCCCACGCTGCAGAGCCCCGGAGGGGGAGGAGCGGAGGCGGACAGAGAGCCCCG
AGGGCTGCGGACAGACTGCGTCCGTCTGGGGGAAGGCCCGGGTCGGGGGCGTGCTGGGGC
CTCTCGGCCGAAGCCGGTGTGTCAGCCAGCTGTCGATACCAGAGCCACGGTAGGTAATCC
ACATTGGATGTCGATAAGGACCACGGGAGTATTTAAAAGAGAGAAAAGTATATATATATA
AAATTATATACACATTTTATCGTACAGATTTTCATAACTTTTCTTCCTGTTTGATACTGT
AAATCTCTATTAGAGCAGAGCTGCCTGGGCCTGGGGGTGGCTGCAGTGGGGTCGGCTGCT
CGCCACCTGCTTCCCTCGGGCCTCAGCCCTGCCAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               271-384, - strand, RNAz p=0.918349

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               271-384, - strand, RNAz p=0.918349

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               142-460, gnl|bosTau2|chr25 (39735462-39735136)
               

               
               142-460, gnl|Hg17|chr7 (1354869-1355232)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-460, gnl|bosTau2|chr25 (39735462-39735136)
               

               
               142-460, gnl|Hg17|chr7 (1354869-1355232)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hlv (0.139256)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)
               

               
               ute (0.132784)

	142-460, gnl\|bosTau2\|chr25 (39735462-39735136)
	142-460, gnl\|Hg17\|chr7 (1354869-1355232)