Ss1.1-rhlv33b_a22.5
|
GGAATGCTTCCGGGCAGGAGCTAGGTGACCCCGGCTGCTTCAAGAACCTGCGGTGTGACA
GCAGCCATGGGGGCGCACCTGGCCCGGCGCTACCTGGGCGATGCATCAAAGGAGCCCGAC
CCCCTGCGGATGCCCACCTTCCCGCCTGACTACGGCTTCCCGGAGCGCAAGGAACGCGAG
ATGGTGGCCACGCAGCAGGAGATGAACGACGCACAGCTGATGCTCCAGCAGCGGGACTAC
TGCGCCCACTACCTCATCCAGCTGCTCAAGTGCAAGCGTGACAGCTTCCCCAACTTTCTG
GCCTGCAAGCATGAGCAGCATGACTGGGACTACTGCGAGCACCTAGACTACGTGAAGCGC
ATGAAGGAGTTTGAGCGGGAGCGGCGGCTGCTCCAGCGGAAGAAGCGGCGGGAGCAGAGG
GAAGCAGAAATGGCCAGAGGCCAGGGGCCCGGTGAGGTGGCTCCCGAAATGGCCCTGTAG
TGGGCCCACCTACCACCCTGTGGACCAGTCAAGAAATAAAAGCCTCCAGGCCCCTTGGCC
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAATGCTTCCGGGCAGGAGCTAGGTGACCCCGGCTGCTTCAAGAACCTGCGGTGTGACA
GCAGCCATGGGGGCGCACCTGGCCCGGCGCTACCTGGGCGATGCATCAAAGGAGCCCGAC
CCCCTGCGGATGCCCACCTTCCCGCCTGACTACGGCTTCCCGGAGCGCAAGGAACGCGAG
ATGGTGGCCACGCAGCAGGAGATGAACGACGCACAGCTGATGCTCCAGCAGCGGGACTAC
TGCGCCCACTACCTCATCCAGCTGCTCAAGTGCAAGCGTGACAGCTTCCCCAACTTTCTG
GCCTGCAAGCATGAGCAGCATGACTGGGACTACTGCGAGCACCTAGACTACGTGAAGCGC
ATGAAGGAGTTTGAGCGGGAGCGGCGGCTGCTCCAGCGGAAGAAGCGGCGGGAGCAGAGG
GAAGCAGAAATGGCCAGAGGCCAGGGGCCCGGTGAGGTGGCTCCCGAAATGGCCCTGTAG
TGGGCCCACCTACCACCCTGTGGACCAGTCAAGAAATAAAAGCCTCCAGGCCCCTTGGCC
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
178-347, gnl|bosTau2|chr7 (7326307-7326476) |
|
178-347, gnl|canFam2|chr20 (51095806-51095627) |
|
178-347, gnl|danRer3|chr10 (20532612-20532436) |
|
178-347, gnl|echTel1|scaffold_254178 (630-809) |
|
178-347, gnl|fr1|chrUn (263718766-263718945) |
|
178-347, gnl|hg17|chr19 (14538570-14538749) |
|
178-347, gnl|Hg17|chr19 (14538746-14538577) |
|
178-347, gnl|loxAfr1|scaffold_217817 (415-236) |
|
178-347, gnl|mm7|chr8 (82149434-82149255) |
|
178-347, gnl|Mm7|chr8 (82149256-82149425) |
|
178-347, gnl|monDom2|scaffold_85 (6061763-6061942) |
|
178-347, gnl|panTro1|chr20 (15179224-15179403) |
|
178-347, gnl|rheMac2|chr19 (14279264-14279443) |
|
178-347, gnl|rn3|chr19 (26264538-26264717) |
|
178-347, gnl|tetNig1|chr18 (1869478-1869302) |
|
178-347, gnl|xenTro1|scaffold_290 (311922-311743) |
| |
|
348-543, gnl|bosTau2|chr7 (7326833-7327028) |
|
348-543, gnl|Hg17|chr19 (14538077-14537885) |
|
348-543, gnl|Mm7|chr8 (82149860-82150052) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
178-347, gnl|bosTau2|chr7 (7326307-7326476) |
|
178-347, gnl|canFam2|chr20 (51095806-51095627) |
|
178-347, gnl|danRer3|chr10 (20532612-20532436) |
|
178-347, gnl|echTel1|scaffold_254178 (630-809) |
|
178-347, gnl|fr1|chrUn (263718766-263718945) |
|
178-347, gnl|hg17|chr19 (14538570-14538749) |
|
178-347, gnl|Hg17|chr19 (14538746-14538577) |
|
178-347, gnl|loxAfr1|scaffold_217817 (415-236) |
|
178-347, gnl|mm7|chr8 (82149434-82149255) |
|
178-347, gnl|Mm7|chr8 (82149256-82149425) |
|
178-347, gnl|monDom2|scaffold_85 (6061763-6061942) |
|
178-347, gnl|panTro1|chr20 (15179224-15179403) |
|
178-347, gnl|rheMac2|chr19 (14279264-14279443) |
|
178-347, gnl|rn3|chr19 (26264538-26264717) |
|
178-347, gnl|tetNig1|chr18 (1869478-1869302) |
|
178-347, gnl|xenTro1|scaffold_290 (311922-311743) |
| |
|
348-543, gnl|bosTau2|chr7 (7326833-7327028) |
|
348-543, gnl|Hg17|chr19 (14538077-14537885) |
|
348-543, gnl|Mm7|chr8 (82149860-82150052) |
|
hlv (1.39256) |
|
mas (0.630915) |
|
nca (0.547495) |
|
ese (0.506009) |
|
nje (0.49776) |
|
nms (0.427716) |
|
elu (0.385356) |
|
ton (0.351) |
|
fbs (0.350693) |
|
duo (0.345602) |
|
fhi (0.339155) |
|
nco (0.323468) |
|
cag (0.302389) |
|
eje (0.296501) |
|
lnt (0.284616) |
|
ute (0.265569) |
|
cov (0.264306) |
|
eru (0.240096) |
|
med (0.232504) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cut (0.169924) |
|
csp (0.161186) |
|
cli (0.152812) |
|
pty (0.142714) |
|
cst (0.140036) |
|
che (0.136314) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
hlv (1.39256) |
|
mas (0.630915) |
|
nca (0.547495) |
|
ese (0.506009) |
|
nje (0.49776) |
|
nms (0.427716) |
|
elu (0.385356) |
|
ton (0.351) |
|
fbs (0.350693) |
|
duo (0.345602) |
|
fhi (0.339155) |
|
nco (0.323468) |
|
cag (0.302389) |
|
eje (0.296501) |
|
lnt (0.284616) |
|
ute (0.265569) |
|
cov (0.264306) |
|
eru (0.240096) |
|
med (0.232504) |
|
fcc (0.197785) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cut (0.169924) |
|
csp (0.161186) |
|
cli (0.152812) |
|
pty (0.142714) |
|
cst (0.140036) |
|
che (0.136314) |
|
ssp (0.13552) |
|
nmm (0.132802) |
|
eep (0.122564) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
jca (0.11396) |
|
cty (0.10408) |
|
nbm (0.0993246) |
