Non-Coding RNA Search

Ss1.1-rhlv33b_e8.5.5

Sequence:


               
               GCCTGGCTGGGGTGGAGCCGCGCCCAGGAGGGACCCATTCATTCTGCTGGATTCTGCTGG
CGCCTCGCTGGGCGCGCGGCCCAAGCTGACCGCGTGCACGGGAACCCGCGGGACCTGGGT
CAGCCCCACTTCTTCGACCTCTGCCGCAGCGGCCGCCGCCACCTCGCCGGAAGAGAGGAA
GCGGGAGAGGAGCTTACATCGCCTGCCGCCCAAGTCTTCCAGCCGCGCCGCCCAGAAGAG
TGCAAGATGTTCGCCTGCACCAAGCTCGCCTGCACCCCCGCTCTGATCCGAGCTGGATCC
AGAGTTGCATACAGACCAATTTCTGCATCAGTGTTATCTCGACCAGAGGCCAGGCCTGGA
GAGGGCTCGACGGTATTTAATGGGGCCCAGAATGGTGTGTCTCAGCCAATCCAAAGGGAG
TTTCAGACCAGTGCAGTCAGCAGAGACATTGATACTGCAGCCAAATTTATTGGTGCAGGT
GCTGCAACAGTAGGAGTGGCTGGTTCTGGTGCTGGTATTGGAACAGTCTTTGGCAGCCTC
ATCATTGGATATGCCAGAAACCCTTCGCTGAAGCAGCAGCTGTTCTCATATGCCATCCTG
GGATTTGCCTTGTCTGAAGCTATGGGTCTCTTTTGCTTGATGGTTGCTTTCTTGATTTTG
TTTGCCATGTAACAGAAATTACTGCTTGAAATGTTGGCATTCATATTAATTATGGACGTA
ATTCTGTGTATCTTACTGTGACTCCGAAAACTGTAGTACTGGTGTCATGGAAGTGTACGT
TATTTCCAAAGTCATTTCATTAAAGATGAAAACTTTAAAAAAAAAAAAAAAAAAAAAAAA
TCTAAATTTAAATTTAGGTCATCACAAAGAAGAACATGTACTTAGACAAAGGCTGTACGA
ATCAGAGGAAACTACAGTAGTTGCCCCAATGATGGAAAATATTCTAATGTAATTTTTATC
AGAAATCTTTAATATGGAGTTCTGCACATTGTAAATTATAGAGCTTTGGTTTTTTCAGTA
AAAGGAAAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGCTGGGGTGGAGCCGCGCCCAGGAGGGACCCATTCATTCTGCTGGATTCTGCTGG
CGCCTCGCTGGGCGCGCGGCCCAAGCTGACCGCGTGCACGGGAACCCGCGGGACCTGGGT
CAGCCCCACTTCTTCGACCTCTGCCGCAGCGGCCGCCGCCACCTCGCCGGAAGAGAGGAA
GCGGGAGAGGAGCTTACATCGCCTGCCGCCCAAGTCTTCCAGCCGCGCCGCCCAGAAGAG
TGCAAGATGTTCGCCTGCACCAAGCTCGCCTGCACCCCCGCTCTGATCCGAGCTGGATCC
AGAGTTGCATACAGACCAATTTCTGCATCAGTGTTATCTCGACCAGAGGCCAGGCCTGGA
GAGGGCTCGACGGTATTTAATGGGGCCCAGAATGGTGTGTCTCAGCCAATCCAAAGGGAG
TTTCAGACCAGTGCAGTCAGCAGAGACATTGATACTGCAGCCAAATTTATTGGTGCAGGT
GCTGCAACAGTAGGAGTGGCTGGTTCTGGTGCTGGTATTGGAACAGTCTTTGGCAGCCTC
ATCATTGGATATGCCAGAAACCCTTCGCTGAAGCAGCAGCTGTTCTCATATGCCATCCTG
GGATTTGCCTTGTCTGAAGCTATGGGTCTCTTTTGCTTGATGGTTGCTTTCTTGATTTTG
TTTGCCATGTAACAGAAATTACTGCTTGAAATGTTGGCATTCATATTAATTATGGACGTA
ATTCTGTGTATCTTACTGTGACTCCGAAAACTGTAGTACTGGTGTCATGGAAGTGTACGT
TATTTCCAAAGTCATTTCATTAAAGATGAAAACTTTAAAAAAAAAAAAAAAAAAAAAAAA
TCTAAATTTAAATTTAGGTCATCACAAAGAAGAACATGTACTTAGACAAAGGCTGTACGA
ATCAGAGGAAACTACAGTAGTTGCCCCAATGATGGAAAATATTCTAATGTAATTTTTATC
AGAAATCTTTAATATGGAGTTCTGCACATTGTAAATTATAGAGCTTTGGTTTTTTCAGTA
AAAGGAAAATGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q95282_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q95282_PIG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               3-290, gnl|bosTau2|chr2 (15175159-15174882)
               

               
               3-290, gnl|Hg17|chr2 (175871863-175871585)
               

               
               3-290, gnl|Mm7|chr2 (73754932-73754666)
               


               
               458-834, gnl|bosTau2|chr11 (10157569-10157947)
               

               
               458-834, gnl|Hg17|chr6 (7276727-7276359)
               

               
               458-834, gnl|Mm7|chr2 (73752999-73752168)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-290, gnl|bosTau2|chr2 (15175159-15174882)
               

               
               3-290, gnl|Hg17|chr2 (175871863-175871585)
               

               
               3-290, gnl|Mm7|chr2 (73754932-73754666)
               


               
               458-834, gnl|bosTau2|chr11 (10157569-10157947)
               

               
               458-834, gnl|Hg17|chr6 (7276727-7276359)
               

               
               458-834, gnl|Mm7|chr2 (73752999-73752168)

Expressed library(ies): 88 entry(ies)

More info

Expressed library(ies): 88 entry(ies)

Help | Less info


               
               hea (8.99796)
               

               
               che (6.95202)
               

               
               ssp (3.79455)
               

               
               cki (3.13946)
               

               
               cje (3.13946)
               

               
               hlv (3.06364)
               

               
               ldo (2.61907)
               

               
               pro (2.56016)
               

               
               sme (2.44349)
               

               
               cst (1.96051)
               

               
               sug (1.78208)
               

               
               vin (1.66279)
               

               
               bfe (1.64843)
               

               
               csk (1.54821)
               

               
               nep (1.28747)
               

               
               nms (1.28315)
               

               
               ste (1.21687)
               

               
               cut (1.18946)
               

               
               pgl (1.18483)
               

               
               nco (1.13214)
               

               
               sto (1.07894)
               

               
               ton (1.053)
               

               
               mas (1.05152)
               

               
               cbe (0.956938)
               

               
               fco (0.943248)
               

               
               ece (0.917221)
               

               
               isp (0.902256)
               

               
               jej (0.890296)
               

               
               eje (0.889504)
               

               
               rec (0.865351)
               

               
               duo (0.864006)
               

               
               elu (0.770713)
               

               
               nlu (0.766724)
               

               
               eli (0.759071)
               

               
               lin (0.728014)
               

               
               hyp (0.714184)
               

               
               gul (0.710353)
               

               
               ebs (0.709807)
               

               
               fbs (0.701385)
               

               
               nbm (0.695272)
               

               
               lyg (0.665513)
               

               
               bla (0.621736)
               

               
               lun (0.601956)
               

               
               aor (0.585823)
               

               
               spc (0.566829)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               kid (0.518941)
               

               
               thg (0.507164)
               

               
               nje (0.49776)
               

               
               eru (0.480192)
               

               
               pan (0.471921)
               

               
               ecc (0.46014)
               

               
               jca (0.45584)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               cov (0.396458)
               

               
               col (0.390016)
               

               
               ese (0.379507)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               fty (0.351679)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               cli (0.305623)
               

               
               fat (0.294855)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

Expressed library(ies): 88 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (8.99796)
               

               
               che (6.95202)
               

               
               ssp (3.79455)
               

               
               cki (3.13946)
               

               
               cje (3.13946)
               

               
               hlv (3.06364)
               

               
               ldo (2.61907)
               

               
               pro (2.56016)
               

               
               sme (2.44349)
               

               
               cst (1.96051)
               

               
               sug (1.78208)
               

               
               vin (1.66279)
               

               
               bfe (1.64843)
               

               
               csk (1.54821)
               

               
               nep (1.28747)
               

               
               nms (1.28315)
               

               
               ste (1.21687)
               

               
               cut (1.18946)
               

               
               pgl (1.18483)
               

               
               nco (1.13214)
               

               
               sto (1.07894)
               

               
               ton (1.053)
               

               
               mas (1.05152)
               

               
               cbe (0.956938)
               

               
               fco (0.943248)
               

               
               ece (0.917221)
               

               
               isp (0.902256)
               

               
               jej (0.890296)
               

               
               eje (0.889504)
               

               
               rec (0.865351)
               

               
               duo (0.864006)
               

               
               elu (0.770713)
               

               
               nlu (0.766724)
               

               
               eli (0.759071)
               

               
               lin (0.728014)
               

               
               hyp (0.714184)
               

               
               gul (0.710353)
               

               
               ebs (0.709807)
               

               
               fbs (0.701385)
               

               
               nbm (0.695272)
               

               
               lyg (0.665513)
               

               
               bla (0.621736)
               

               
               lun (0.601956)
               

               
               aor (0.585823)
               

               
               spc (0.566829)
               

               
               ill (0.526778)
               

               
               sin (0.524843)
               

               
               kid (0.518941)
               

               
               thg (0.507164)
               

               
               nje (0.49776)
               

               
               eru (0.480192)
               

               
               pan (0.471921)
               

               
               ecc (0.46014)
               

               
               jca (0.45584)
               

               
               cag (0.453583)
               

               
               amn (0.417711)
               

               
               cov (0.396458)
               

               
               col (0.390016)
               

               
               ese (0.379507)
               

               
               tra (0.369276)
               

               
               sag (0.36543)
               

               
               fty (0.351679)
               

               
               mcp (0.341297)
               

               
               fhi (0.339155)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               cli (0.305623)
               

               
               fat (0.294855)
               

               
               pty (0.285429)
               

               
               lnt (0.284616)
               

               
               nmm (0.265604)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               med (0.232504)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               cty (0.10408)

	3-290, gnl\|bosTau2\|chr2 (15175159-15174882)
	3-290, gnl\|Hg17\|chr2 (175871863-175871585)
	3-290, gnl\|Mm7\|chr2 (73754932-73754666)

	458-834, gnl\|bosTau2\|chr11 (10157569-10157947)
	458-834, gnl\|Hg17\|chr6 (7276727-7276359)
	458-834, gnl\|Mm7\|chr2 (73752999-73752168)

	hea (8.99796)
	che (6.95202)
	ssp (3.79455)
	cki (3.13946)
	cje (3.13946)
	hlv (3.06364)
	ldo (2.61907)
	pro (2.56016)
	sme (2.44349)
	cst (1.96051)
	sug (1.78208)
	vin (1.66279)
	bfe (1.64843)
	csk (1.54821)
	nep (1.28747)
	nms (1.28315)
	ste (1.21687)
	cut (1.18946)
	pgl (1.18483)
	nco (1.13214)
	sto (1.07894)
	ton (1.053)
	mas (1.05152)
	cbe (0.956938)
	fco (0.943248)
	ece (0.917221)
	isp (0.902256)
	jej (0.890296)
	eje (0.889504)
	rec (0.865351)
	duo (0.864006)
	elu (0.770713)
	nlu (0.766724)
	eli (0.759071)
	lin (0.728014)
	hyp (0.714184)
	gul (0.710353)
	ebs (0.709807)
	fbs (0.701385)
	nbm (0.695272)
	lyg (0.665513)
	bla (0.621736)
	lun (0.601956)
	aor (0.585823)
	spc (0.566829)
	ill (0.526778)
	sin (0.524843)
	kid (0.518941)
	thg (0.507164)
	nje (0.49776)
	eru (0.480192)
	pan (0.471921)
	ecc (0.46014)
	jca (0.45584)
	cag (0.453583)
	amn (0.417711)
	cov (0.396458)
	col (0.390016)
	ese (0.379507)
	tra (0.369276)
	sag (0.36543)
	fty (0.351679)
	mcp (0.341297)
	fhi (0.339155)
	mga (0.32041)
	tbr (0.308356)
	cli (0.305623)
	fat (0.294855)
	pty (0.285429)
	lnt (0.284616)
	nmm (0.265604)
	ute (0.265569)
	ova (0.258264)
	med (0.232504)
	tes (0.207814)
	fcc (0.197785)
	cmu (0.186393)
	eye (0.170503)
	csp (0.161186)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	nca (0.136874)
	pla (0.133672)
	ret (0.128733)
	eep (0.122564)
	cly (0.120642)
	cty (0.10408)