Non-Coding RNA Search

Ss1.1-rhlv33b_k8.5

Sequence:


               
               ATGATGACGTGGGTGACTGGGATGAGGACACTGACAGTGCCATAGGGAGCTTCCGCTATT
CTTCCCGCAGTAATTCTCAGAAACCCGAAACAGACACCGCCTCCTCCCTGGCTGTTTCTG
ATAGCTATGGAAGTGGCAGCAGAGCTGGCAAAGAGATGGATAGCAGTATTAATAAGTGGC
TCAGTGGCCTCAGGACAGAGGAAAAATCTCCTCCCCAAAGTGATTGGTCTGGAAGCTCCA
GGGGGAAGTGCACCAGATCTTCCCTGCTCCGGGAGACAGAGTCTAAGTCCTCCAGTTATA
AGTTCTCCAAATCCCAGTCAGAGGAACAGGACACCTCCTCCTACCACGAGGCCAATGGCA
ACTCTGTAAGAAGCACTTCGAAGTTCTCTGCTTCCTCCACCAGGGAGGGCAGAGAGATGC
ACACGTTCTCCAGGTCGACATTCAGTGAGACCTCAAGTTCTCGAGAGGAAAGCCCAGAGC
CCTACTTCTTCCGTCGGACCCCTGAGCCCTCTGAAGGGGAAGAGTCCCCAGAACCACGGC
GTCCGAATTGGGCCAGACCCAGGGACTGGGAAGATGTGGAAGAGTCATCCAAGTCGGACT
TTTCTGAATTTGGAGCCAAGAGGAAATTCACCCAGAGCTTCATGAGGTCTGAAGAGGAGG
GGGAGAAAGAGAGGATGGAAAAGAGAGAAGAGGGGAGGTTTGCTTCAGGAAGGCGGTCCC
AGTATCGGAGAAGCACTGACAGGGAGGAGGAGGAGGAAATGGACGATGAAGCCATCATTG
CTGCCTGGAGACGCCGGCAAGAAGAAACCAGGACTAAGCTGCAGAGGAGGAGGGAAGATT
AAGCTGGGCCACATGTATCTGAGAGATGAGCTTGCAAAGGCACTATGTTTTGTCAGTGAC
TCCAGCTTATATCCAGGAAGGCTGTGAATGCAGGATGTAGTTCTATATGTAGAGGTTTTG
TAATGAGACCCAGGAACTCTATCCTGTGCCAAGCCTCACCACTCCCAGAAATGCTGAGTT
CTGGTTGTTTCTTTATAATGTTTGGGATCTCATTAAATTGATATGGTGCCAAACAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGATGACGTGGGTGACTGGGATGAGGACACTGACAGTGCCATAGGGAGCTTCCGCTATT
CTTCCCGCAGTAATTCTCAGAAACCCGAAACAGACACCGCCTCCTCCCTGGCTGTTTCTG
ATAGCTATGGAAGTGGCAGCAGAGCTGGCAAAGAGATGGATAGCAGTATTAATAAGTGGC
TCAGTGGCCTCAGGACAGAGGAAAAATCTCCTCCCCAAAGTGATTGGTCTGGAAGCTCCA
GGGGGAAGTGCACCAGATCTTCCCTGCTCCGGGAGACAGAGTCTAAGTCCTCCAGTTATA
AGTTCTCCAAATCCCAGTCAGAGGAACAGGACACCTCCTCCTACCACGAGGCCAATGGCA
ACTCTGTAAGAAGCACTTCGAAGTTCTCTGCTTCCTCCACCAGGGAGGGCAGAGAGATGC
ACACGTTCTCCAGGTCGACATTCAGTGAGACCTCAAGTTCTCGAGAGGAAAGCCCAGAGC
CCTACTTCTTCCGTCGGACCCCTGAGCCCTCTGAAGGGGAAGAGTCCCCAGAACCACGGC
GTCCGAATTGGGCCAGACCCAGGGACTGGGAAGATGTGGAAGAGTCATCCAAGTCGGACT
TTTCTGAATTTGGAGCCAAGAGGAAATTCACCCAGAGCTTCATGAGGTCTGAAGAGGAGG
GGGAGAAAGAGAGGATGGAAAAGAGAGAAGAGGGGAGGTTTGCTTCAGGAAGGCGGTCCC
AGTATCGGAGAAGCACTGACAGGGAGGAGGAGGAGGAAATGGACGATGAAGCCATCATTG
CTGCCTGGAGACGCCGGCAAGAAGAAACCAGGACTAAGCTGCAGAGGAGGAGGGAAGATT
AAGCTGGGCCACATGTATCTGAGAGATGAGCTTGCAAAGGCACTATGTTTTGTCAGTGAC
TCCAGCTTATATCCAGGAAGGCTGTGAATGCAGGATGTAGTTCTATATGTAGAGGTTTTG
TAATGAGACCCAGGAACTCTATCCTGTGCCAAGCCTCACCACTCCCAGAAATGCTGAGTT
CTGGTTGTTTCTTTATAATGTTTGGGATCTCATTAAATTGATATGGTGCCAAACAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               520-679, + strand, RNAz p=0.801838

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               520-679, + strand, RNAz p=0.801838

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-866, gnl|bosTau2|chr3 (2692450-2691588)
               

               
               1-866, gnl|Hg17|chr1 (163828662-163829513)
               

               
               1-866, gnl|Mm7|chr1 (166070173-166069313)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-866, gnl|bosTau2|chr3 (2692450-2691588)
               

               
               1-866, gnl|Hg17|chr1 (163828662-163829513)
               

               
               1-866, gnl|Mm7|chr1 (166070173-166069313)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               eru (0.240096)
               

               
               nms (0.213858)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	1-866, gnl\|bosTau2\|chr3 (2692450-2691588)
	1-866, gnl\|Hg17\|chr1 (163828662-163829513)
	1-866, gnl\|Mm7\|chr1 (166070173-166069313)

	eru (0.240096)
	nms (0.213858)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	jca (0.11396)
	ldo (0.0970026)