Non-Coding RNA Search

Ss1.1-rhlv33b_m3.5

Sequence:


               
               CTACTCGGCGTTGCTTCTACAGTGGCATATGGAAGTTCCTGGGCTAGGGGTAGACTCAAA
GCCACAACCACAGCAGCACTGGATCCAAGCCACATCTGTGACCTACACTGCCGCTTTGCA
GCAATGCCAGATCCTTAACCCACTGGCGTCCGTGTGCGGCCGGGGGCTACGGCCGCTGGT
GCTGTCGTGGAGCCGGGAGCTGCCCTGCGCCTGGCGCGCCTTGCACACCTCCGCGGTCTG
CGCCAAGAACCGGGCGGCCCGAGTCCGAGTGAGCAAGGGGGATAAGCCAGTGACCTATGA
GGAGGCGCACGCGCCTCACTACATCGCGCACCGCAAGGGCTGGCTGTCGCTGCACACAGG
TAACCTGGACGGGGAGGACCATGCTGCAGAGAGAACGGTGGAAGATGTTTTCCTGCGCAA
ATTTATGCTGGGCACCTTCCCAGGCTGCCTGGCTGACCAGCTTGTTCTGAAGCGCCGGGC
TAACCAGCTGGAGATCTGTGCCCTGGTCCTGAGGCAGCTGCCCCCACACAAGTTCTACTT
CCTTGTGGGCTACAGTGAGACTCTGCTGTCCCACTTTTACAAGTGTCCTGTGCATCTGCA
CCTCCAGACTGTGCCCTCGAAAGTTGTGTATAAGTATATCTAGGACGACGGCCCTTTTTG
CATCAAGCTCTAGCCTGCAGAAGAAATCTGTGGAAAGGGACTGAAGTGAAACAGAGGAAA
TTCATCCCCTCGGGTTACTGAGGCTTTGTCTTCAAAGTTGCTGTTGAATAAATAGACTCT
CCTTGTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACTCGGCGTTGCTTCTACAGTGGCATATGGAAGTTCCTGGGCTAGGGGTAGACTCAAA
GCCACAACCACAGCAGCACTGGATCCAAGCCACATCTGTGACCTACACTGCCGCTTTGCA
GCAATGCCAGATCCTTAACCCACTGGCGTCCGTGTGCGGCCGGGGGCTACGGCCGCTGGT
GCTGTCGTGGAGCCGGGAGCTGCCCTGCGCCTGGCGCGCCTTGCACACCTCCGCGGTCTG
CGCCAAGAACCGGGCGGCCCGAGTCCGAGTGAGCAAGGGGGATAAGCCAGTGACCTATGA
GGAGGCGCACGCGCCTCACTACATCGCGCACCGCAAGGGCTGGCTGTCGCTGCACACAGG
TAACCTGGACGGGGAGGACCATGCTGCAGAGAGAACGGTGGAAGATGTTTTCCTGCGCAA
ATTTATGCTGGGCACCTTCCCAGGCTGCCTGGCTGACCAGCTTGTTCTGAAGCGCCGGGC
TAACCAGCTGGAGATCTGTGCCCTGGTCCTGAGGCAGCTGCCCCCACACAAGTTCTACTT
CCTTGTGGGCTACAGTGAGACTCTGCTGTCCCACTTTTACAAGTGTCCTGTGCATCTGCA
CCTCCAGACTGTGCCCTCGAAAGTTGTGTATAAGTATATCTAGGACGACGGCCCTTTTTG
CATCAAGCTCTAGCCTGCAGAAGAAATCTGTGGAAAGGGACTGAAGTGAAACAGAGGAAA
TTCATCCCCTCGGGTTACTGAGGCTTTGTCTTCAAAGTTGCTGTTGAATAAATAGACTCT
CCTTGTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14028399|dbj|BAB54957.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14028399|dbj|BAB54957.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               183-487, gnl|bosTau2|chr5 (56919791-56919488)
               

               
               183-487, gnl|Hg17|chr7 (43682211-43679694)
               

               
               183-487, gnl|Mm7|chr11 (5659554-5656614)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-487, gnl|bosTau2|chr5 (56919791-56919488)
               

               
               183-487, gnl|Hg17|chr7 (43682211-43679694)
               

               
               183-487, gnl|Mm7|chr11 (5659554-5656614)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               hlv (0.557025)
               

               
               fty (0.527519)
               

               
               duo (0.345602)
               

               
               cki (0.330469)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.557025)
               

               
               fty (0.527519)
               

               
               duo (0.345602)
               

               
               cki (0.330469)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	183-487, gnl\|bosTau2\|chr5 (56919791-56919488)
	183-487, gnl\|Hg17\|chr7 (43682211-43679694)
	183-487, gnl\|Mm7\|chr11 (5659554-5656614)

	hlv (0.557025)
	fty (0.527519)
	duo (0.345602)
	cki (0.330469)
	che (0.272628)
	fce (0.271592)
	pla (0.267344)
	med (0.232504)
	ece (0.229305)
	mas (0.210305)
	nep (0.183925)
	mgm (0.180343)
	ill (0.175593)
	fbs (0.175346)
	mcp (0.170648)
	cje (0.165235)
	eli (0.151814)
	spl (0.143184)
	cst (0.140036)
	nca (0.136874)
	ste (0.135208)
	cov (0.132153)
	bla (0.124347)
	pgl (0.118483)
	nbm (0.0993246)
	jej (0.0989218)