Ss1.1-rhlv33b_p14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGTGCGGAGGGAGTCCCTGAAACTTCTCCCAACAGCCCCAGGGCCAATCTCCCCTCAG CCCACTCCCCTCGTCGCCAGCTCCCAGGTCCCCACTCCCTGCACCGGGGGTGGGGTAGGG AGCCAGGCCCGTCTCTCGCTGGGACACACACAGGGGCCGGGAGCGGGGACGGGACCCCCG AGGCGGGGGGGACGCACCGACAGACAGACGGCCGGGCGCCCGCCCCTGCGGGCAGGCAGG CAGGAGGAGGCGGAGGCGGGGGTACGAAGGGGAGGACTGGGTCTGGGGAGTTTCCTCTCA ACTATCGGGGGAGAAACTCCCCGCAGCCGGAGGAAAGACCCAGACGGTGTTTTCCTCCCG GGGGCCGCGCTCCCCCGCCCCGCGTAGCGGCGGTCGCCGCCGCCGCCACCGGCGCCTCCA CCTCTATCATCTCTTTCTCCACCACCTCGGGCCCCGGTGTCCCCGGCCAGCACTATGCCC ATCTTACTGTTCCTGATAGACACGTCTGCCTCTATGAACCAGCGCAGCCATCTGGGCACC ACCTACCTGGACACGGCCAAAGGCGCGGTAGAGACCTTCATGAAGCTCCGTGCCCGGGAC CCTGCCAGCAGAGGAGACAGGTATATGCTGGTCACTTTCGAAGAGCCGCCCTATGCTATC AAGGCCGGATGGAAAGAAAACCATGCAACGTTTATGAATGAACTGAAAAACCTTCAGGCT GAAGGACTTACGACTCTTGGCCAATCCCTAAGGACAGCTTTTGATTTATTAAATTTAAAT AGATTAGTAACTGGCATAGACAACTATGGGCAGGGTAACTTCAGCTCCTGAACATCTTTG GAGATGGTTGAATGTAGTCCTATAGCATTGGAAATATACATTGCAACTTGGAGTCACTTT GTTTCTGTTTTTATGGAATTGCACTTCTATTGTTTAATTAGTAAATGTGTATTTTCTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGTGCGGAGGGAGTCCCTGAAACTTCTCCCAACAGCCCCAGGGCCAATCTCCCCTCAG CCCACTCCCCTCGTCGCCAGCTCCCAGGTCCCCACTCCCTGCACCGGGGGTGGGGTAGGG AGCCAGGCCCGTCTCTCGCTGGGACACACACAGGGGCCGGGAGCGGGGACGGGACCCCCG AGGCGGGGGGGACGCACCGACAGACAGACGGCCGGGCGCCCGCCCCTGCGGGCAGGCAGG CAGGAGGAGGCGGAGGCGGGGGTACGAAGGGGAGGACTGGGTCTGGGGAGTTTCCTCTCA ACTATCGGGGGAGAAACTCCCCGCAGCCGGAGGAAAGACCCAGACGGTGTTTTCCTCCCG GGGGCCGCGCTCCCCCGCCCCGCGTAGCGGCGGTCGCCGCCGCCGCCACCGGCGCCTCCA CCTCTATCATCTCTTTCTCCACCACCTCGGGCCCCGGTGTCCCCGGCCAGCACTATGCCC ATCTTACTGTTCCTGATAGACACGTCTGCCTCTATGAACCAGCGCAGCCATCTGGGCACC ACCTACCTGGACACGGCCAAAGGCGCGGTAGAGACCTTCATGAAGCTCCGTGCCCGGGAC CCTGCCAGCAGAGGAGACAGGTATATGCTGGTCACTTTCGAAGAGCCGCCCTATGCTATC AAGGCCGGATGGAAAGAAAACCATGCAACGTTTATGAATGAACTGAAAAACCTTCAGGCT GAAGGACTTACGACTCTTGGCCAATCCCTAAGGACAGCTTTTGATTTATTAAATTTAAAT AGATTAGTAACTGGCATAGACAACTATGGGCAGGGTAACTTCAGCTCCTGAACATCTTTG GAGATGGTTGAATGTAGTCCTATAGCATTGGAAATATACATTGCAACTTGGAGTCACTTT GTTTCTGTTTTTATGGAATTGCACTTCTATTGTTTAATTAGTAAATGTGTATTTTCTTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-160, - strand, RNAz p=0.990321 | |
| 239-394, - strand, RNAz p=0.993167 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-160, - strand, RNAz p=0.990321 | |
| 239-394, - strand, RNAz p=0.993167 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-585, gnl|bosTau2|chr12 (10644349-10643747) | |
| 1-585, gnl|Hg17|chr13 (50925132-50924552) | |
| 1-585, gnl|Mm7|chr14 (57627282-57626733) | |
| 662-814, gnl|bosTau2|chr12 (10642670-10642518) | |
| 662-814, gnl|canFam2|chr22 (3490664-3490519) | |
| 662-814, gnl|danRer3|chr16 (20381910-20382074) | |
| 662-814, gnl|dasNov1|scaffold_91910 (2773-2937) | |
| 662-814, gnl|echTel1|scaffold_270185 (7139-7303) | |
| 662-814, gnl|fr1|chrUn (212979779-212979943) | |
| 662-814, gnl|galGal2|chr1 (162241800-162241964) | |
| 662-814, gnl|hg17|chr13 (50923160-50923324) | |
| 662-814, gnl|Hg17|chr13 (50923313-50923161) | |
| 662-814, gnl|loxAfr1|scaffold_31721 (7456-7620) | |
| 662-814, gnl|mm7|chr14 (57625504-57625668) | |
| 662-814, gnl|Mm7|chr14 (57625657-57625505) | |
| 662-814, gnl|monDom2|scaffold_15 (55008275-55008111) | |
| 662-814, gnl|oryCun1|scaffold_201651 (79480-79316) | |
| 662-814, gnl|panTro1|chr14_random (17075725-17075889) | |
| 662-814, gnl|rheMac2|chr17 (30277573-30277737) | |
| 662-814, gnl|rn3|chr15 (42025164-42025328) | |
| 662-814, gnl|tetNig1|chr2 (18291280-18291444) | |
| 662-814, gnl|xenTro1|scaffold_223 (1300200-1300036) | |
| 820-960, gnl|bosTau2|chr12 (10641492-10641352) | |
| 820-960, gnl|Hg17|chr13 (50922116-50921986) | |
| 820-960, gnl|Mm7|chr14 (57624591-57624477) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-585, gnl|bosTau2|chr12 (10644349-10643747) | |
| 1-585, gnl|Hg17|chr13 (50925132-50924552) | |
| 1-585, gnl|Mm7|chr14 (57627282-57626733) | |
| 662-814, gnl|bosTau2|chr12 (10642670-10642518) | |
| 662-814, gnl|canFam2|chr22 (3490664-3490519) | |
| 662-814, gnl|danRer3|chr16 (20381910-20382074) | |
| 662-814, gnl|dasNov1|scaffold_91910 (2773-2937) | |
| 662-814, gnl|echTel1|scaffold_270185 (7139-7303) | |
| 662-814, gnl|fr1|chrUn (212979779-212979943) | |
| 662-814, gnl|galGal2|chr1 (162241800-162241964) | |
| 662-814, gnl|hg17|chr13 (50923160-50923324) | |
| 662-814, gnl|Hg17|chr13 (50923313-50923161) | |
| 662-814, gnl|loxAfr1|scaffold_31721 (7456-7620) | |
| 662-814, gnl|mm7|chr14 (57625504-57625668) | |
| 662-814, gnl|Mm7|chr14 (57625657-57625505) | |
| 662-814, gnl|monDom2|scaffold_15 (55008275-55008111) | |
| 662-814, gnl|oryCun1|scaffold_201651 (79480-79316) | |
| 662-814, gnl|panTro1|chr14_random (17075725-17075889) | |
| 662-814, gnl|rheMac2|chr17 (30277573-30277737) | |
| 662-814, gnl|rn3|chr15 (42025164-42025328) | |
| 662-814, gnl|tetNig1|chr2 (18291280-18291444) | |
| 662-814, gnl|xenTro1|scaffold_223 (1300200-1300036) | |
| 820-960, gnl|bosTau2|chr12 (10641492-10641352) | |
| 820-960, gnl|Hg17|chr13 (50922116-50921986) | |
| 820-960, gnl|Mm7|chr14 (57624591-57624477) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cut (0.169924) | |
| cje (0.165235) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| cje (0.165235) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) |