Non-Coding RNA Search

Ss1.1-rhlv34b_m10.5

Sequence:


               
               ATAGTTATATTTTCCCTAAACAGGAGGACCTGGGAGCAAACCACCTCTCCTGGTGCATGA
GACACACGTTTGCATCATCAAGGCATAAATACGAATTTCTACACAACAAGACGACTCCAG
ACATAAGAATAACGGTTTCCCCAAAGAAGATTGGCATCCTATTAGACTATGAAAATTCAA
AACTGTCATTTTTCAACGTGGGCCTTTCTCAGCATCTGTACACATTCAGTTGTCAGCTTC
ACCAATTCGTGCATCCCTGTTTTTCTCTGGAAAAGCCTGGATGTCTAAAGATACACAATG
GCATTTCAATGCCAAAGCATGTCACTTTCTATTAGACCACATTCTGATGCCGAGCATCCT
CTCTTCGGTACCTACTCCTCTCCCAGCCACTCACGCCTCAGCTGGCTGAATTGGGCATCC
AAGCCCCGTGCACTAGCATCATTTATGGCTCATGTCATTATCTGGCGGACTGGTGTGCTG
ACATTCACCGCACCTGACCTGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGTTATATTTTCCCTAAACAGGAGGACCTGGGAGCAAACCACCTCTCCTGGTGCATGA
GACACACGTTTGCATCATCAAGGCATAAATACGAATTTCTACACAACAAGACGACTCCAG
ACATAAGAATAACGGTTTCCCCAAAGAAGATTGGCATCCTATTAGACTATGAAAATTCAA
AACTGTCATTTTTCAACGTGGGCCTTTCTCAGCATCTGTACACATTCAGTTGTCAGCTTC
ACCAATTCGTGCATCCCTGTTTTTCTCTGGAAAAGCCTGGATGTCTAAAGATACACAATG
GCATTTCAATGCCAAAGCATGTCACTTTCTATTAGACCACATTCTGATGCCGAGCATCCT
CTCTTCGGTACCTACTCCTCTCCCAGCCACTCACGCCTCAGCTGGCTGAATTGGGCATCC
AAGCCCCGTGCACTAGCATCATTTATGGCTCATGTCATTATCTGGCGGACTGGTGTGCTG
ACATTCACCGCACCTGACCTGGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               194-393, - strand, RNAz p=0.988128

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-393, - strand, RNAz p=0.988128

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               74-502, gnl|bosTau2|chr21 (13406576-13406164)
               

               
               74-502, gnl|Hg17|chr15 (81225414-81224992)
               

               
               74-502, gnl|Mm7|chr7 (77408540-77408128)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-502, gnl|bosTau2|chr21 (13406576-13406164)
               

               
               74-502, gnl|Hg17|chr15 (81225414-81224992)
               

               
               74-502, gnl|Mm7|chr7 (77408540-77408128)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               ldo (0.194005)
               

               
               hlv (0.139256)
               

               
               nbm (0.0993246)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               ldo (0.194005)
               

               
               hlv (0.139256)
               

               
               nbm (0.0993246)

	74-502, gnl\|bosTau2\|chr21 (13406576-13406164)
	74-502, gnl\|Hg17\|chr15 (81225414-81224992)
	74-502, gnl\|Mm7\|chr7 (77408540-77408128)