Non-Coding RNA Search

Ss1.1-rhlv38b_g3.5

Sequence:


               
               ACCCGGGACCCGGCCCAGCCTGCAGTCACGACGGTGGCCTGGCATCCATTTTTTCTCAGA
GGCGGACAGGGGGCTGTGTACGGATCTATTTCAGTCTCTTGTCCCCCTTCCCCTTCCCTC
CACCGTGACTCACATTTTCCTCCTGGGCTCCTAGGGCCAGGAAGGGAAGTCGCCTGGTTT
GCCCCCCTCTCCTTCTCCCCCACTGGGGGCTATTCTTAGAAACCCTCGAGGGAGATAGTG
TGCCCCCCTGTTCACCCCTGCGGCCGGGAGGGGGCCCTTGTGAGCCGGACTGAGAAGGGA
AGCTGGGAGGCCAGTCCTCGAGGTGGGAGCTGGAAACGGCTCCGGGGTTTGGCCGGACCA
CCCCCCCCCCCGCCCCGTCCATCTCACCCAAGCAAAATGAAACCTAGGTCCCAGCGTCTG
AGCCACATGCCCAAGTTTGCAGGACTAGTTCTGGTTCCAGAACTCCTGGCTTCCCGTGGG
TGCCCTTGCCCTCCCTTCTCCCCAAACCAGAGCCCTGCCCCAGCCAACTCTGGGGTGGAG
CCACAAGTGCCAGGTTAACCCCTCAATTTCCAGAAACCTTGAGGCCAGCTTCCCTGAGCT
TTGCTCTCCAGGCAAAGCTGCTGCCGATTGGAGTCCTAGGGTGTGGGGCGTGGTGGGGCC
AAGTGGTAGGGGTGGCTGGGCATGGCGGCCTCCCATCCAGTTAGGAAGGGTTCTTCATGT
CGGTAGAATTGATGACTCCCAAGCCTGGGTTCTGAGGCTGGGCCTCAAGAACCTGGGCGA
ATGGAATGAATAGGAATCTTAGGAACCCGGAATGTATTATACAGCATGGGTGGGACACAG
CTTTGGAGTCTGACTGTCCTGGACTCAAGCCCCACACCAGCTACTTCCAGCTGTGTGATC
TTGGGCAAGTTACATGGCTTCTCTGTGCCCGAGTCCCTCACCTTTAAAATGAGGTAGTGT
TACAAAGAACTCTTTCAGGGTTCCCTTGTGGTTCAG------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AGCTGTGGTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCGGGACCCGGCCCAGCCTGCAGTCACGACGGTGGCCTGGCATCCATTTTTTCTCAGA
GGCGGACAGGGGGCTGTGTACGGATCTATTTCAGTCTCTTGTCCCCCTTCCCCTTCCCTC
CACCGTGACTCACATTTTCCTCCTGGGCTCCTAGGGCCAGGAAGGGAAGTCGCCTGGTTT
GCCCCCCTCTCCTTCTCCCCCACTGGGGGCTATTCTTAGAAACCCTCGAGGGAGATAGTG
TGCCCCCCTGTTCACCCCTGCGGCCGGGAGGGGGCCCTTGTGAGCCGGACTGAGAAGGGA
AGCTGGGAGGCCAGTCCTCGAGGTGGGAGCTGGAAACGGCTCCGGGGTTTGGCCGGACCA
CCCCCCCCCCCGCCCCGTCCATCTCACCCAAGCAAAATGAAACCTAGGTCCCAGCGTCTG
AGCCACATGCCCAAGTTTGCAGGACTAGTTCTGGTTCCAGAACTCCTGGCTTCCCGTGGG
TGCCCTTGCCCTCCCTTCTCCCCAAACCAGAGCCCTGCCCCAGCCAACTCTGGGGTGGAG
CCACAAGTGCCAGGTTAACCCCTCAATTTCCAGAAACCTTGAGGCCAGCTTCCCTGAGCT
TTGCTCTCCAGGCAAAGCTGCTGCCGATTGGAGTCCTAGGGTGTGGGGCGTGGTGGGGCC
AAGTGGTAGGGGTGGCTGGGCATGGCGGCCTCCCATCCAGTTAGGAAGGGTTCTTCATGT
CGGTAGAATTGATGACTCCCAAGCCTGGGTTCTGAGGCTGGGCCTCAAGAACCTGGGCGA
ATGGAATGAATAGGAATCTTAGGAACCCGGAATGTATTATACAGCATGGGTGGGACACAG
CTTTGGAGTCTGACTGTCCTGGACTCAAGCCCCACACCAGCTACTTCCAGCTGTGTGATC
TTGGGCAAGTTACATGGCTTCTCTGTGCCCGAGTCCCTCACCTTTAAAATGAGGTAGTGT
TACAAAGAACTCTTTCAGGGTTCCCTTGTGGTTCAG------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------AGCTGTGGTGTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               117-407, - strand, RNAz p=0.993944
               

               
               448-550, - strand, RNAz p=0.86375

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-407, - strand, RNAz p=0.993944
               

               
               448-550, - strand, RNAz p=0.86375

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-907, gnl|bosTau2|chr5 (26316859-26317790)
               

               
               2-907, gnl|Hg17|chr12 (47460321-47459328)
               

               
               2-907, gnl|Mm7|chr15 (98589162-98588220)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-907, gnl|bosTau2|chr5 (26316859-26317790)
               

               
               2-907, gnl|Hg17|chr12 (47460321-47459328)
               

               
               2-907, gnl|Mm7|chr15 (98589162-98588220)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cje (0.165235)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)

	117-407, - strand, RNAz p=0.993944
	448-550, - strand, RNAz p=0.86375

	2-907, gnl\|bosTau2\|chr5 (26316859-26317790)
	2-907, gnl\|Hg17\|chr12 (47460321-47459328)
	2-907, gnl\|Mm7\|chr15 (98589162-98588220)