Non-Coding RNA Search

Ss1.1-rhlv38b_j1.5

Sequence:


               
               TCAGTAGACTGACAGTTCAACAGAATGAGATTCCTTTTCATATGATTTTTTAAACTAAAA
TTGACATCTTATTACACTCATAATACAGAGAGTTGAGAATTTGTTTAACTTTTTGGTTCT
TGAGGGAGAGGGGATGAAAGAGATGGATCTTAAAATATAGATACTTTTCCAGCAAGTTTT
AAGGCCCTTTATATAAAACTTAGTTTTTGTTACACCTTAAATAGAACTAAAATACTTTAA
AATGCCCTAAGAATTCTAAAACATATTTGACTCTCAAAAATGAATTTAAAATATGCATTA
AATATAATGTTAGAAAATTTAAGATTAGCATAAAATAGTTGAATGTATATATTTTTTTCC
TTTAGGACTAAGATCCCCAAGTTTAGAATTTCTCTTAAAAGCAAGCAACTGTGACTTATT
TTCTTGCAATCTTCATTTACAGAAATAACATAAACCATATGAGGCAAATTCTGTTCTTTT
TGATGTGTCTGACATCTTTCTAAGTAGCTGTTGAGTAGTAACAACCACCATTCTGTCTAG
GTCAGCATGATTTGCACTAGTGAATTGCTGCCCAGGCTTAAAACATAACTCCAGGGAATG
CAGAATTTTCTTCCATTTCTTTATGTTGTAACATTGGGAAAACATTGTCACTAGCTAAGA
TGATAAATTGGAAAACAGTCTTGTTAGGGTGGGAAAAAAGTCCATGGTGATGGATCATTA
TTTCAAAAAGAAGAAAAAAAAAATCATGTGAAAAGGAATAGTGGTTCCTCTTGATGTATA
GTATGCCTGTATTATAGTTTTTACAAAATTGTGAACTTGTGTAATAGTATAATAGGAGAT
ATTGTTGAATTTCTAACTGTTTATACATTTAAATTCATATATGTAATGTTTGTTTTATCG
ATTACAATCTGAATTTCTAAGAAGCATGTTGACTTTTGCAATAAAGATGCAATATGGAAT
GGTTCACAATTGGGAAAAAAAAAGAAAAAAGATAAAAGTGTTACAAATTTAAAAGAATTT
GGAAAATTTATGAACCATTCCAAAAATTATAACAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGTAGACTGACAGTTCAACAGAATGAGATTCCTTTTCATATGATTTTTTAAACTAAAA
TTGACATCTTATTACACTCATAATACAGAGAGTTGAGAATTTGTTTAACTTTTTGGTTCT
TGAGGGAGAGGGGATGAAAGAGATGGATCTTAAAATATAGATACTTTTCCAGCAAGTTTT
AAGGCCCTTTATATAAAACTTAGTTTTTGTTACACCTTAAATAGAACTAAAATACTTTAA
AATGCCCTAAGAATTCTAAAACATATTTGACTCTCAAAAATGAATTTAAAATATGCATTA
AATATAATGTTAGAAAATTTAAGATTAGCATAAAATAGTTGAATGTATATATTTTTTTCC
TTTAGGACTAAGATCCCCAAGTTTAGAATTTCTCTTAAAAGCAAGCAACTGTGACTTATT
TTCTTGCAATCTTCATTTACAGAAATAACATAAACCATATGAGGCAAATTCTGTTCTTTT
TGATGTGTCTGACATCTTTCTAAGTAGCTGTTGAGTAGTAACAACCACCATTCTGTCTAG
GTCAGCATGATTTGCACTAGTGAATTGCTGCCCAGGCTTAAAACATAACTCCAGGGAATG
CAGAATTTTCTTCCATTTCTTTATGTTGTAACATTGGGAAAACATTGTCACTAGCTAAGA
TGATAAATTGGAAAACAGTCTTGTTAGGGTGGGAAAAAAGTCCATGGTGATGGATCATTA
TTTCAAAAAGAAGAAAAAAAAAATCATGTGAAAAGGAATAGTGGTTCCTCTTGATGTATA
GTATGCCTGTATTATAGTTTTTACAAAATTGTGAACTTGTGTAATAGTATAATAGGAGAT
ATTGTTGAATTTCTAACTGTTTATACATTTAAATTCATATATGTAATGTTTGTTTTATCG
ATTACAATCTGAATTTCTAAGAAGCATGTTGACTTTTGCAATAAAGATGCAATATGGAAT
GGTTCACAATTGGGAAAAAAAAAGAAAAAAGATAAAAGTGTTACAAATTTAAAAGAATTT
GGAAAATTTATGAACCATTCCAAAAATTATAACAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               749-868, - strand, RNAz p=0.941639

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               749-868, - strand, RNAz p=0.941639

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1056, gnl|bosTau2|chr18 (53083691-53084743)
               

               
               1-1056, gnl|Hg17|chr5 (145647931-145648971)
               

               
               1-1056, gnl|Mm7|chr18 (42718432-42719447)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1056, gnl|bosTau2|chr18 (53083691-53084743)
               

               
               1-1056, gnl|Hg17|chr5 (145647931-145648971)
               

               
               1-1056, gnl|Mm7|chr18 (42718432-42719447)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               gul (0.355177)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               nco (0.161734)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               mgp (0.230681)
               

               
               cmu (0.186393)
               

               
               nco (0.161734)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

	1-1056, gnl\|bosTau2\|chr18 (53083691-53084743)
	1-1056, gnl\|Hg17\|chr5 (145647931-145648971)
	1-1056, gnl\|Mm7\|chr18 (42718432-42719447)

	gul (0.355177)
	mgp (0.230681)
	cmu (0.186393)
	nco (0.161734)
	hlv (0.139256)
	lyg (0.133103)
	ret (0.128733)