Non-Coding RNA Search

Ss1.1-rhlv38b_k2.5

Sequence:


               
               GATAGTAGCTCTGGGTACCCTGGGGGCCTAGGAGTACAGCGAGGCCCTGGGTGTGTGTAG
CCCCTCCCGGCGCTGGTTTCCTCAGAAAATGTTTTAGTCTAGCTGCTTCCTTGGAGCGCT
GGGGAGGGGTGGCATCCAGCCTTGGGAGAGACACGGATGTCCTCTGGAGAGGAGAGTGAG
AACTTCACAGTGTCCTCAGAGCTCCGGGAGTTGGCAAAGCTGATGAAGGAACAGTAGACG
GCAACCCAAGCGCACCACTTCAGCTGGGAGAGGTAAGTGGATGGATGGGTTAGGTCAGTG
AGAGGCACCCTAATGAGCCCACATAAGGGCCATTCCCAGGCACCAGTGCCAACCCCAAGT
CCACCTGGTGCAGCTCAAACCTTGCCCCACAAAGTCCCACAGTCCCAGGCCCCCATAGCT
AACTCCGGTACCAAAGCACTGGTCCTACTCCCTTGTCCTGCATGTCTGACCCCACATCCC
CTCAGGCCTAAGGAGAATGGCCCTTGACATCCCCCATCACACTAAGGACCCCACCTTTTT
TCCACCAGTCCCCTCCAAGATGCTTTAAAACCTGGCCCCATCCTCAGACCAATCTCCCAT
GTACCTACCCTGACCCAGACCCTTGGCTTCCCCCAGAGCTCTGGCTTTCTTCACCCAGCA
TCACCCCAGCCCTGACCCCTCAGTGCTGGCCCTGCTTCATTCTGAATCCATCCCTTCCCC
AGTGCCAGGTAGAGCTACCTGGAAGGAAACAGCCCTGCCCACCTTGAGCATGANGCCACA
CATGCTGAAGATCATGCCAAGCAGGTTCATGTAGTCTGGTGTTGGGTCATCCAAAGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAGTAGCTCTGGGTACCCTGGGGGCCTAGGAGTACAGCGAGGCCCTGGGTGTGTGTAG
CCCCTCCCGGCGCTGGTTTCCTCAGAAAATGTTTTAGTCTAGCTGCTTCCTTGGAGCGCT
GGGGAGGGGTGGCATCCAGCCTTGGGAGAGACACGGATGTCCTCTGGAGAGGAGAGTGAG
AACTTCACAGTGTCCTCAGAGCTCCGGGAGTTGGCAAAGCTGATGAAGGAACAGTAGACG
GCAACCCAAGCGCACCACTTCAGCTGGGAGAGGTAAGTGGATGGATGGGTTAGGTCAGTG
AGAGGCACCCTAATGAGCCCACATAAGGGCCATTCCCAGGCACCAGTGCCAACCCCAAGT
CCACCTGGTGCAGCTCAAACCTTGCCCCACAAAGTCCCACAGTCCCAGGCCCCCATAGCT
AACTCCGGTACCAAAGCACTGGTCCTACTCCCTTGTCCTGCATGTCTGACCCCACATCCC
CTCAGGCCTAAGGAGAATGGCCCTTGACATCCCCCATCACACTAAGGACCCCACCTTTTT
TCCACCAGTCCCCTCCAAGATGCTTTAAAACCTGGCCCCATCCTCAGACCAATCTCCCAT
GTACCTACCCTGACCCAGACCCTTGGCTTCCCCCAGAGCTCTGGCTTTCTTCACCCAGCA
TCACCCCAGCCCTGACCCCTCAGTGCTGGCCCTGCTTCATTCTGAATCCATCCCTTCCCC
AGTGCCAGGTAGAGCTACCTGGAAGGAAACAGCCCTGCCCACCTTGAGCATGANGCCACA
CATGCTGAAGATCATGCCAAGCAGGTTCATGTAGTCTGGTGTTGGGTCATCCAAAGCTGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               190-535, gnl|bosTau2|chr7 (8383011-8383346)
               

               
               190-535, gnl|Hg17|chr19 (12640358-12640701)
               

               
               190-535, gnl|Mm7|chr8 (83670473-83670155)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-535, gnl|bosTau2|chr7 (8383011-8383346)
               

               
               190-535, gnl|Hg17|chr19 (12640358-12640701)
               

               
               190-535, gnl|Mm7|chr8 (83670473-83670155)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	190-535, gnl\|bosTau2\|chr7 (8383011-8383346)
	190-535, gnl\|Hg17\|chr19 (12640358-12640701)
	190-535, gnl\|Mm7\|chr8 (83670473-83670155)