Non-Coding RNA Search

Ss1.1-rhlv39b_f8.5

Sequence:


               
               ACAAGGCCACGCTCAGCATGGGGCGGCTGGTTCTCTCCAACAAGATGGCCCGCACCATCG
GCTTCTTCTACACGCTGTTCCTGCACTGCTTGGTCTTCCTGGTGCTCTACAAGCTGGCAT
GGAGCGAGAGCGTGGAGCGGGATTGTGCCACCTTCTGTGCCAAGAAGTTCGCCGATCACC
TGCACAAGTTCCACGAGAATGACCACGGGGCAGCAGCCGGTGACTTGTGGCAGTGACGTC
CTGGGGCTTCCCCCAGGATGGTAATGGCTGCGTTCCCCTCCCCTGCTTGTTCAGCTGCTT
CTAATGACATAGGCTTCCCTTCCCTGTTGAATTCCCCACGTAGACTGCCTTTGCCCTCCA
CCCAACAGTGCCCCAGGTCCCCTGAGGCCCCCTTAAAAGATGGTCTCAGCCACATCAGGC
CCCCTAGGTCCAGAAAACTCCCAAGGCCAAGCCAGGCTGAGCCAAAGGGACCCCTTCAGG
CCCATCTCAGGCTGGTGACCCAGCCCCAGTCCCACCTGCAGCCTGACCACGAGTCCTGGT
GGCAGAGACATCCCAGCTGTGACACTGAGTTCCCCCTGATTCTGGCAGTAGTTAATCCGG
TTGGCGTCCGCAGGCCTCTCTGTGCCAGGCTCTGGGATCCCCTTGGGCTCCCCTAGGATC
CATCACCCTCTCCCCAAGATGTGGAAGCCCTTCCTTGCAGGCCAGCAGGCTTTGAGTCCA
GCCTTCACCCCAACTCCACCCCACCCCACCCCAAGAAGTGAAGGAGCCCCAGAGGGCAGG
ATAGTCTCTGTTGCCCCCTCCCAGCCCTTGGAGCCACTCTAATGTTTGCTTTCTTATTAG
CAAGTTATTCTGGCTTTTAAGTGAGGAGGAATCTCCAGTGAGTCGCTACACCCCAGGCTC
TTCAAACCCAAGGACCGGTTTGAGGGGCCCAGGTGCTTCTCAGCCAAGCAGAGCTGGCTG
TGGGCCACCCTAGCATGGCCACCCTGAGGCCACTGGCAGATCTTCCTAAATTAGATTTGC
ACTTGCTTCAGCTTTGCACATTTTGAATAAACACATTGTTGCAGCCACAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAGGCCACGCTCAGCATGGGGCGGCTGGTTCTCTCCAACAAGATGGCCCGCACCATCG
GCTTCTTCTACACGCTGTTCCTGCACTGCTTGGTCTTCCTGGTGCTCTACAAGCTGGCAT
GGAGCGAGAGCGTGGAGCGGGATTGTGCCACCTTCTGTGCCAAGAAGTTCGCCGATCACC
TGCACAAGTTCCACGAGAATGACCACGGGGCAGCAGCCGGTGACTTGTGGCAGTGACGTC
CTGGGGCTTCCCCCAGGATGGTAATGGCTGCGTTCCCCTCCCCTGCTTGTTCAGCTGCTT
CTAATGACATAGGCTTCCCTTCCCTGTTGAATTCCCCACGTAGACTGCCTTTGCCCTCCA
CCCAACAGTGCCCCAGGTCCCCTGAGGCCCCCTTAAAAGATGGTCTCAGCCACATCAGGC
CCCCTAGGTCCAGAAAACTCCCAAGGCCAAGCCAGGCTGAGCCAAAGGGACCCCTTCAGG
CCCATCTCAGGCTGGTGACCCAGCCCCAGTCCCACCTGCAGCCTGACCACGAGTCCTGGT
GGCAGAGACATCCCAGCTGTGACACTGAGTTCCCCCTGATTCTGGCAGTAGTTAATCCGG
TTGGCGTCCGCAGGCCTCTCTGTGCCAGGCTCTGGGATCCCCTTGGGCTCCCCTAGGATC
CATCACCCTCTCCCCAAGATGTGGAAGCCCTTCCTTGCAGGCCAGCAGGCTTTGAGTCCA
GCCTTCACCCCAACTCCACCCCACCCCACCCCAAGAAGTGAAGGAGCCCCAGAGGGCAGG
ATAGTCTCTGTTGCCCCCTCCCAGCCCTTGGAGCCACTCTAATGTTTGCTTTCTTATTAG
CAAGTTATTCTGGCTTTTAAGTGAGGAGGAATCTCCAGTGAGTCGCTACACCCCAGGCTC
TTCAAACCCAAGGACCGGTTTGAGGGGCCCAGGTGCTTCTCAGCCAAGCAGAGCTGGCTG
TGGGCCACCCTAGCATGGCCACCCTGAGGCCACTGGCAGATCTTCCTAAATTAGATTTGC
ACTTGCTTCAGCTTTGCACATTTTGAATAAACACATTGTTGCAGCCACAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38112287|gb|AAR11234.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38112287|gb|AAR11234.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               431-581, - strand, RNAz p=0.975125
               

               
               621-1000, - strand, RNAz p=0.999946

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               431-581, - strand, RNAz p=0.975125
               

               
               621-1000, - strand, RNAz p=0.999946

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               153-1069, gnl|bosTau2|chr25 (32120944-32121836)
               

               
               153-1069, gnl|Hg17|chr7 (101519733-101520687)
               

               
               153-1069, gnl|Mm7|chr5 (135220285-135219415)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-1069, gnl|bosTau2|chr25 (32120944-32121836)
               

               
               153-1069, gnl|Hg17|chr7 (101519733-101520687)
               

               
               153-1069, gnl|Mm7|chr5 (135220285-135219415)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               mas (0.42061)
               

               
               hlv (0.278513)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               hlv (0.278513)
               

               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	431-581, - strand, RNAz p=0.975125
	621-1000, - strand, RNAz p=0.999946

	153-1069, gnl\|bosTau2\|chr25 (32120944-32121836)
	153-1069, gnl\|Hg17\|chr7 (101519733-101520687)
	153-1069, gnl\|Mm7\|chr5 (135220285-135219415)

	mas (0.42061)
	hlv (0.278513)
	ece (0.229305)
	fty (0.17584)
	ton (0.1755)
	mcp (0.170648)
	cli (0.152812)
	eli (0.151814)
	cag (0.151194)
	pty (0.142714)
	ute (0.132784)
	clu (0.119646)
	med (0.116252)
	jca (0.11396)