Non-Coding RNA Search

Ss1.1-rhlv40b_l21.5

Sequence:


               
               TCGATATTACTGGAAGGACGAAGGAATAAGACCACTGACGGGGAGGCTGGCGGAGCCGCG
CTGCTCCGACCGGGCAGGGGCTGCCCCAAGGACGATAACTTGCTTTGCTTAAAAGTAGAT
GTTTAAGCGATGCGTCATACAGGCAGTATTAACTTGTGTTAATTAACTTTAGTTTAACAA
CAAAAGGCAGTCTGTGCCTTTTTGTCAGGCCATCAATATGTATTGTTAAAATTAACTGCA
ACATACCCCCCCCCCCAGATATCAAGTATACACTGTTCTCGTTTGTGTGTGTGTGTGTGT
GTGTGTGTTTATACACGTGTGTTCCAGATCTTTTTTTTTTTTTTTTCTTCTGAATGTGAT
CATGTTTTTGGATGATACCTGAGCAGGGTTGCCTTTTTTTTATTTATTACCATTATATAT
TATATTATATTATATATTTTTTGCTTTCTTATAACTTTAGAGGAAAGTCAAATCTTGGTA
TTATTAAAATTGTTTAAAAAAGATTAAATTGTCCAGTTGATACATGGAGATCACTGGTCT
ATCTCTAAAATAATATGAATTTTTCTTTATGGTGTAATAACGTGTGCCAGCGATCTAGTC
CACACAGCGACTTTGTCCGTAGGCTAGGGAAGCAGTGATGTCGTCAGTGGGAAGATGAGC
CGCACAGATGAGGGGACTCCACGTGTTTTACTTACTCAGCAATGGAACTGCACCTGGGGC
TTTGTGAATAAAATTTAGCTGCCTTGTATAGTCCTTTGAAAGAGACATGTATGATCTGTG
AGAATTATAGTTTGTTTTCTTTTTTTAGAAGAAACATTTGCAAAAGATCTTTCCAAAGAA
AATGTGCCACAGATCTTTTGTTTGTTGTTCTCTGTAATGAGGATTAATTGCTGTTATAAA
AAAAAAAAAAACATGTAATTGACTTGTTTGTCTTCAAATTCTTTACTTTTCACAAGAGGA
TCGAGCTGTAAAAAAAAAAAAAAATTAATAAAAATTTAGAGAAATCAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGATATTACTGGAAGGACGAAGGAATAAGACCACTGACGGGGAGGCTGGCGGAGCCGCG
CTGCTCCGACCGGGCAGGGGCTGCCCCAAGGACGATAACTTGCTTTGCTTAAAAGTAGAT
GTTTAAGCGATGCGTCATACAGGCAGTATTAACTTGTGTTAATTAACTTTAGTTTAACAA
CAAAAGGCAGTCTGTGCCTTTTTGTCAGGCCATCAATATGTATTGTTAAAATTAACTGCA
ACATACCCCCCCCCCCAGATATCAAGTATACACTGTTCTCGTTTGTGTGTGTGTGTGTGT
GTGTGTGTTTATACACGTGTGTTCCAGATCTTTTTTTTTTTTTTTTCTTCTGAATGTGAT
CATGTTTTTGGATGATACCTGAGCAGGGTTGCCTTTTTTTTATTTATTACCATTATATAT
TATATTATATTATATATTTTTTGCTTTCTTATAACTTTAGAGGAAAGTCAAATCTTGGTA
TTATTAAAATTGTTTAAAAAAGATTAAATTGTCCAGTTGATACATGGAGATCACTGGTCT
ATCTCTAAAATAATATGAATTTTTCTTTATGGTGTAATAACGTGTGCCAGCGATCTAGTC
CACACAGCGACTTTGTCCGTAGGCTAGGGAAGCAGTGATGTCGTCAGTGGGAAGATGAGC
CGCACAGATGAGGGGACTCCACGTGTTTTACTTACTCAGCAATGGAACTGCACCTGGGGC
TTTGTGAATAAAATTTAGCTGCCTTGTATAGTCCTTTGAAAGAGACATGTATGATCTGTG
AGAATTATAGTTTGTTTTCTTTTTTTAGAAGAAACATTTGCAAAAGATCTTTCCAAAGAA
AATGTGCCACAGATCTTTTGTTTGTTGTTCTCTGTAATGAGGATTAATTGCTGTTATAAA
AAAAAAAAAAACATGTAATTGACTTGTTTGTCTTCAAATTCTTTACTTTTCACAAGAGGA
TCGAGCTGTAAAAAAAAAAAAAAATTAATAAAAATTTAGAGAAATCAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8CDA0_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8CDA0_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               798-1019, gnl|bosTau2|chr18 (40190438-40190650)
               

               
               798-1019, gnl|Hg17|chr4 (88419181-88419370)
               

               
               798-1019, gnl|Mm7|chr5 (103044430-103044618)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               798-1019, gnl|bosTau2|chr18 (40190438-40190650)
               

               
               798-1019, gnl|Hg17|chr4 (88419181-88419370)
               

               
               798-1019, gnl|Mm7|chr5 (103044430-103044618)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               sto (0.719295)
               

               
               pro (0.512033)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               cje (0.330469)
               

               
               cte (0.29274)
               

               
               hlv (0.278513)
               

               
               lyg (0.266205)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.719295)
               

               
               pro (0.512033)
               

               
               aor (0.390549)
               

               
               cmu (0.372787)
               

               
               cje (0.330469)
               

               
               cte (0.29274)
               

               
               hlv (0.278513)
               

               
               lyg (0.266205)
               

               
               hea (0.204499)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	798-1019, gnl\|bosTau2\|chr18 (40190438-40190650)
	798-1019, gnl\|Hg17\|chr4 (88419181-88419370)
	798-1019, gnl\|Mm7\|chr5 (103044430-103044618)

	sto (0.719295)
	pro (0.512033)
	aor (0.390549)
	cmu (0.372787)
	cje (0.330469)
	cte (0.29274)
	hlv (0.278513)
	lyg (0.266205)
	hea (0.204499)
	mgm (0.180343)
	sin (0.174948)
	rec (0.17307)
	eye (0.170503)
	mga (0.160205)
	isp (0.150376)
	ski (0.146735)
	lnt (0.142308)
	csk (0.140746)
	che (0.136314)
	ssp (0.13552)
	kid (0.129735)
	ova (0.129132)
	ret (0.128733)
	jca (0.11396)
	ldo (0.0970026)