Ss1.1-rhlv40b_m17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGGCCGGAAGCGGAACCGAGCGGAGCCGAGCGCAGCCGGAAGGAGCCGAGGTTGCCCG AAGGGCCTGAGAGCTGCCGGGCGTTGGGCCGGGTGGAACCCGCGCCATGGCGGCCGAGGG GACAGCTGTGGCCGGAGGCGGGGCTGTCGGAGGCCTCCTGGCCAAGGACAGCTTGCTGCA GTCTAAATGCCCCGACGCGGCCCCAAGCCGGCGGCGCGGCTCCGCGCGGTCGCGAGACGC CGAGCGCCGAGCCTACCAGTGGTGCCGGGAGTACTTGGGCGGGGCCTGGCGCCGAGTGCG GCCGGAGGAGCTGAGGGTTGACCCCGTGAGCGGAGGCCTCAGTAACCTGCTCTTCCGCTG CTCGCTGCCGGACCACCTGCCCAGTGTTGGCGAGGAGCCCCGGGAGGTGCTGCTGCGGCT GTATGGGGCCATCCTGCAGGGCGTGGACTCCTTGGTCCTTGAAAGTGTGATGTTCGCCAT TCTTGCAGAGCGGGCGCTGGGCCCCCAGCTCTACGGAGTCTTTCCGGAGGGCCGGCTGGA ACAGTACATCCCAAGCCGGCCACTGAAGACCCACGAGCTTCGAGAGCCAGTGTTGTCTGC AGCCATTGCCACGAAGATGGCCCGTTTCCACGGCATGGAGATGCCTTTCACTAAGGAGCC TCACTGGCTATTTGGGACTATGGAGCGGTATTTAAAGCAGATCCAGGACCTGCCCCCCAC TGGCCTTCCCCAGATGAACCTGCTGGAGATGTACAGCTTGAAGGAAGAAATGGGCAGCCT CAGGAAGTTGCTAGACACTACCCCATCACCAGTGGTTTTCTGCCACAACGACATCCAGGA AGGGAACATCTTATTGCTCTCAGAGCCGGAAAATGCCGACAGCCTCATGCTGGTTGATTT CGAGTATAGCAGTTATAACTACAGGGGCTTTGACATTGGGAACCACTTTTGTGAGTGGGT TTACGATTATACGCACGAGGAGTGGCCTTTCTACAAAGCGCAGCCTGCAGACTACCCCAC CCGGGGACAGCAGCTCCATTTTATTCGCCACTACCTGGCGGAGGTAAAGAAAGGTGAAAC CATCTCCCAGGAGGAGCAGAGGAAACTGGAAGCGGATTTGCTGGTAGAGGCTAATCGGTA CGCTCTGGCATCTCATTTCTTTTGGGGTCTCTGGTCCATTCTCCAGGCATCCATGTCCAC TATAGAATTTGGCTACTTGGAGTATGCCCAGTCTCGGTTCCAGTCCTACTTCCAGCAGAA GGCACAGCTGACCAGCCTCCAGCCCTCATCCTGATGCTCCACCTCCCAGCTCCTGGGATC TCTCCCGGAGCCTCCAGGGCAGGACCCTGGGGACTGGGCTGAGCCCCCGCGTGAGACCGG GGTTGAGGAAGCTGGCCTCTCCAGCCCCAAGTGTGAGCAGGTCCCCACCGTGGGCAAGTG GGCAGAAGCCCTGGGATGTGTGCTTTAAGACAATAAACCAGCTTCTTCCTTCAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGGCCGGAAGCGGAACCGAGCGGAGCCGAGCGCAGCCGGAAGGAGCCGAGGTTGCCCG AAGGGCCTGAGAGCTGCCGGGCGTTGGGCCGGGTGGAACCCGCGCCATGGCGGCCGAGGG GACAGCTGTGGCCGGAGGCGGGGCTGTCGGAGGCCTCCTGGCCAAGGACAGCTTGCTGCA GTCTAAATGCCCCGACGCGGCCCCAAGCCGGCGGCGCGGCTCCGCGCGGTCGCGAGACGC CGAGCGCCGAGCCTACCAGTGGTGCCGGGAGTACTTGGGCGGGGCCTGGCGCCGAGTGCG GCCGGAGGAGCTGAGGGTTGACCCCGTGAGCGGAGGCCTCAGTAACCTGCTCTTCCGCTG CTCGCTGCCGGACCACCTGCCCAGTGTTGGCGAGGAGCCCCGGGAGGTGCTGCTGCGGCT GTATGGGGCCATCCTGCAGGGCGTGGACTCCTTGGTCCTTGAAAGTGTGATGTTCGCCAT TCTTGCAGAGCGGGCGCTGGGCCCCCAGCTCTACGGAGTCTTTCCGGAGGGCCGGCTGGA ACAGTACATCCCAAGCCGGCCACTGAAGACCCACGAGCTTCGAGAGCCAGTGTTGTCTGC AGCCATTGCCACGAAGATGGCCCGTTTCCACGGCATGGAGATGCCTTTCACTAAGGAGCC TCACTGGCTATTTGGGACTATGGAGCGGTATTTAAAGCAGATCCAGGACCTGCCCCCCAC TGGCCTTCCCCAGATGAACCTGCTGGAGATGTACAGCTTGAAGGAAGAAATGGGCAGCCT CAGGAAGTTGCTAGACACTACCCCATCACCAGTGGTTTTCTGCCACAACGACATCCAGGA AGGGAACATCTTATTGCTCTCAGAGCCGGAAAATGCCGACAGCCTCATGCTGGTTGATTT CGAGTATAGCAGTTATAACTACAGGGGCTTTGACATTGGGAACCACTTTTGTGAGTGGGT TTACGATTATACGCACGAGGAGTGGCCTTTCTACAAAGCGCAGCCTGCAGACTACCCCAC CCGGGGACAGCAGCTCCATTTTATTCGCCACTACCTGGCGGAGGTAAAGAAAGGTGAAAC CATCTCCCAGGAGGAGCAGAGGAAACTGGAAGCGGATTTGCTGGTAGAGGCTAATCGGTA CGCTCTGGCATCTCATTTCTTTTGGGGTCTCTGGTCCATTCTCCAGGCATCCATGTCCAC TATAGAATTTGGCTACTTGGAGTATGCCCAGTCTCGGTTCCAGTCCTACTTCCAGCAGAA GGCACAGCTGACCAGCCTCCAGCCCTCATCCTGATGCTCCACCTCCCAGCTCCTGGGATC TCTCCCGGAGCCTCCAGGGCAGGACCCTGGGGACTGGGCTGAGCCCCCGCGTGAGACCGG GGTTGAGGAAGCTGGCCTCTCCAGCCCCAAGTGTGAGCAGGTCCCCACCGTGGGCAAGTG GGCAGAAGCCCTGGGATGTGTGCTTTAAGACAATAAACCAGCTTCTTCCTTCAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 554-689, + strand, RNAz p=0.979149 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 554-689, + strand, RNAz p=0.979149 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 21-371, gnl|bosTau2|chr5 (75690806-75691155) | |
| 21-371, gnl|Hg17|chr22 (49311441-49311091) | |
| 21-371, gnl|Mm7|chr15 (89512565-89512239) | |
| 432-553, gnl|bosTau2|chr5 (75691664-75691785) | |
| 432-553, gnl|canFam2|chr10 (19722340-19722188) | |
| 432-553, gnl|danRer3|chr18 (6634854-6634994) | |
| 432-553, gnl|dasNov1|scaffold_11196 (87745-87593) | |
| 432-553, gnl|echTel1|scaffold_300952 (7299-7149) | |
| 432-553, gnl|fr1|chrUn (73491983-73491843) | |
| 432-553, gnl|hg17|chr22 (49310320-49310469) | |
| 432-553, gnl|Hg17|chr22 (49310443-49310322) | |
| 432-553, gnl|mm7|chr15 (89511590-89511742) | |
| 432-553, gnl|Mm7|chr15 (89511713-89511592) | |
| 432-553, gnl|monDom2|scaffold_119 (1125529-1125665) | |
| 432-553, gnl|oryCun1|scaffold_161978 (7224-7365) | |
| 432-553, gnl|panTro1|chr23 (49802903-49803052) | |
| 432-553, gnl|rheMac2|chr10 (94608432-94608581) | |
| 432-553, gnl|rn3|chr7 (127783171-127783323) | |
| 432-553, gnl|tetNig1|chr13 (4107672-4107543) | |
| 554-689, gnl|bosTau2|chr5 (75691976-75692111) | |
| 554-689, gnl|canFam2|chr10 (19722694-19722583) | |
| 554-689, gnl|danRer3|chr18 (6632872-6632982) | |
| 554-689, gnl|dasNov1|scaffold_11196 (90994-90906) | |
| 554-689, gnl|echTel1|scaffold_300952 (7597-7496) | |
| 554-689, gnl|fr1|chrUn (73493323-73493235) | |
| 554-689, gnl|hg17|chr22 (49309965-49310076) | |
| 554-689, gnl|Hg17|chr22 (49310126-49309991) | |
| 554-689, gnl|loxAfr1|scaffold_136687 (787-895) | |
| 554-689, gnl|mm7|chr15 (89511267-89511372) | |
| 554-689, gnl|Mm7|chr15 (89511422-89511287) | |
| 554-689, gnl|monDom2|scaffold_119 (1125143-1125262) | |
| 554-689, gnl|oryCun1|scaffold_102339 (973-1082) | |
| 554-689, gnl|panTro1|chr23 (49802548-49802659) | |
| 554-689, gnl|rheMac2|chr10 (94608097-94608208) | |
| 554-689, gnl|rn3|chr7 (127782851-127782956) | |
| 554-689, gnl|tetNig1|chr13 (4108142-4108063) | |
| 913-1033, gnl|bosTau2|chr5 (75693015-75693135) | |
| 913-1033, gnl|Hg17|chr22 (49308667-49308547) | |
| 913-1033, gnl|Mm7|chr15 (89510559-89510439) | |
| 1216-1352, gnl|bosTau2|chr5 (75693894-75694027) | |
| 1216-1352, gnl|Hg17|chr22 (49307832-49307698) | |
| 1216-1352, gnl|Mm7|chr15 (89509543-89509414) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 21-371, gnl|bosTau2|chr5 (75690806-75691155) | |
| 21-371, gnl|Hg17|chr22 (49311441-49311091) | |
| 21-371, gnl|Mm7|chr15 (89512565-89512239) | |
| 432-553, gnl|bosTau2|chr5 (75691664-75691785) | |
| 432-553, gnl|canFam2|chr10 (19722340-19722188) | |
| 432-553, gnl|danRer3|chr18 (6634854-6634994) | |
| 432-553, gnl|dasNov1|scaffold_11196 (87745-87593) | |
| 432-553, gnl|echTel1|scaffold_300952 (7299-7149) | |
| 432-553, gnl|fr1|chrUn (73491983-73491843) | |
| 432-553, gnl|hg17|chr22 (49310320-49310469) | |
| 432-553, gnl|Hg17|chr22 (49310443-49310322) | |
| 432-553, gnl|mm7|chr15 (89511590-89511742) | |
| 432-553, gnl|Mm7|chr15 (89511713-89511592) | |
| 432-553, gnl|monDom2|scaffold_119 (1125529-1125665) | |
| 432-553, gnl|oryCun1|scaffold_161978 (7224-7365) | |
| 432-553, gnl|panTro1|chr23 (49802903-49803052) | |
| 432-553, gnl|rheMac2|chr10 (94608432-94608581) | |
| 432-553, gnl|rn3|chr7 (127783171-127783323) | |
| 432-553, gnl|tetNig1|chr13 (4107672-4107543) | |
| 554-689, gnl|bosTau2|chr5 (75691976-75692111) | |
| 554-689, gnl|canFam2|chr10 (19722694-19722583) | |
| 554-689, gnl|danRer3|chr18 (6632872-6632982) | |
| 554-689, gnl|dasNov1|scaffold_11196 (90994-90906) | |
| 554-689, gnl|echTel1|scaffold_300952 (7597-7496) | |
| 554-689, gnl|fr1|chrUn (73493323-73493235) | |
| 554-689, gnl|hg17|chr22 (49309965-49310076) | |
| 554-689, gnl|Hg17|chr22 (49310126-49309991) | |
| 554-689, gnl|loxAfr1|scaffold_136687 (787-895) | |
| 554-689, gnl|mm7|chr15 (89511267-89511372) | |
| 554-689, gnl|Mm7|chr15 (89511422-89511287) | |
| 554-689, gnl|monDom2|scaffold_119 (1125143-1125262) | |
| 554-689, gnl|oryCun1|scaffold_102339 (973-1082) | |
| 554-689, gnl|panTro1|chr23 (49802548-49802659) | |
| 554-689, gnl|rheMac2|chr10 (94608097-94608208) | |
| 554-689, gnl|rn3|chr7 (127782851-127782956) | |
| 554-689, gnl|tetNig1|chr13 (4108142-4108063) | |
| 913-1033, gnl|bosTau2|chr5 (75693015-75693135) | |
| 913-1033, gnl|Hg17|chr22 (49308667-49308547) | |
| 913-1033, gnl|Mm7|chr15 (89510559-89510439) | |
| 1216-1352, gnl|bosTau2|chr5 (75693894-75694027) | |
| 1216-1352, gnl|Hg17|chr22 (49307832-49307698) | |
| 1216-1352, gnl|Mm7|chr15 (89509543-89509414) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| duo (0.172801) | |
| nje (0.16592) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ese (0.126502) | |
| ecc (0.115035) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| nje (0.16592) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ese (0.126502) | |
| ecc (0.115035) |