Non-Coding RNA Search

Ss1.1-rhlv40b_m22.5

Sequence:


               
               AACGACCCAAAAAACAGCTGTCAAACAAGGGCTGGAGGTCAAGGAAGCTCCTTCTAATAA
CAGTGGAAACAGAGCTGCTGTCCAGGGTGACCATCCCCAGCTGCAGCTCTCTCTTGCAAT
TGGGCTGGATGATGGCACTGCAGACCAGCAGAGGGCCCATCCTGCCACCCCGGCCTTGGA
GGAGCACCAGAAGCCCCCAGTGTCCATCAAGCAGGAGAGATGTGATCCAGAATCTGTGAT
CTCCCAGAGCCATCCCTCACCCTCATCAGAGATGACAGGCCCCACTTTCACTGAAAGTGG
TATCAAAATACACTTATGCCATTACTGTGGGGAACGGTTTGATTCTCGTAGTAATCTAAG
ACATCATCTCCATACCCACGTGTCCGGATCCCTCCCATTTGGTGTCCCTGCTTCCATTCT
GGAAAGTAATGACCTTGGTGAAGTGCATCCACTTAATGAAAATAGCCAAGCTCTTGAGTG
CCGTAGGCTCAGCTCCTTCATTGTCAAGGAAAATGAGCAGCAGCCTGACCACTCAAGCCG
GAGTACCACAGAGCCTTTGCAGATCAGTCAAGTGTCTTTGATCTCCAAAGACACAGAGCC
AGTAGAATTAAACTGTAATTTTTCTTTTTCAAGGAAAAGAAAAATCAGCTGTACCATCTG
TGGTCATAAATTTCTCCGAAAGAGCCAGTTGCTGGAACATATGTATACACACAAAGGTAA
ATCTTACAGATATAACCGATGCCAAAGGTTTGGTAATGCATTATTAGCCCAGAGATTTCA
GCCATATTGTGACAGTTGGTCTGATATACCCCTGAAAAGCTCTCGCTTGTCACAAGAACA
GTTAGACTCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACGACCCAAAAAACAGCTGTCAAACAAGGGCTGGAGGTCAAGGAAGCTCCTTCTAATAA
CAGTGGAAACAGAGCTGCTGTCCAGGGTGACCATCCCCAGCTGCAGCTCTCTCTTGCAAT
TGGGCTGGATGATGGCACTGCAGACCAGCAGAGGGCCCATCCTGCCACCCCGGCCTTGGA
GGAGCACCAGAAGCCCCCAGTGTCCATCAAGCAGGAGAGATGTGATCCAGAATCTGTGAT
CTCCCAGAGCCATCCCTCACCCTCATCAGAGATGACAGGCCCCACTTTCACTGAAAGTGG
TATCAAAATACACTTATGCCATTACTGTGGGGAACGGTTTGATTCTCGTAGTAATCTAAG
ACATCATCTCCATACCCACGTGTCCGGATCCCTCCCATTTGGTGTCCCTGCTTCCATTCT
GGAAAGTAATGACCTTGGTGAAGTGCATCCACTTAATGAAAATAGCCAAGCTCTTGAGTG
CCGTAGGCTCAGCTCCTTCATTGTCAAGGAAAATGAGCAGCAGCCTGACCACTCAAGCCG
GAGTACCACAGAGCCTTTGCAGATCAGTCAAGTGTCTTTGATCTCCAAAGACACAGAGCC
AGTAGAATTAAACTGTAATTTTTCTTTTTCAAGGAAAAGAAAAATCAGCTGTACCATCTG
TGGTCATAAATTTCTCCGAAAGAGCCAGTTGCTGGAACATATGTATACACACAAAGGTAA
ATCTTACAGATATAACCGATGCCAAAGGTTTGGTAATGCATTATTAGCCCAGAGATTTCA
GCCATATTGTGACAGTTGGTCTGATATACCCCTGAAAAGCTCTCGCTTGTCACAAGAACA
GTTAGACTCATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CSB1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CSB1_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, - strand, RNAz p=0.861579
               

               
               237-436, - strand, RNAz p=0.680481
               

               
               548-707, - strand, RNAz p=0.956764

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.861579
               

               
               237-436, - strand, RNAz p=0.680481
               

               
               548-707, - strand, RNAz p=0.956764

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr10 (51619782-51620630)
               

               
               1-852, gnl|Hg17|chr14 (64024300-64023452)
               

               
               1-852, gnl|Mm7|chr12 (74308231-74307371)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr10 (51619782-51620630)
               

               
               1-852, gnl|Hg17|chr14 (64024300-64023452)
               

               
               1-852, gnl|Mm7|chr12 (74308231-74307371)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hlv (0.139256)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.139256)

	1-119, - strand, RNAz p=0.861579
	237-436, - strand, RNAz p=0.680481
	548-707, - strand, RNAz p=0.956764

	1-852, gnl\|bosTau2\|chr10 (51619782-51620630)
	1-852, gnl\|Hg17\|chr14 (64024300-64023452)
	1-852, gnl\|Mm7\|chr12 (74308231-74307371)