Non-Coding RNA Search

Ss1.1-rhlv41b_f1.5

Sequence:


               
               GGAAAGGAGATTGAGATTGACATTGAACCCACAGACAAGGTAATGTCTGCCCAGTACCTC
TCCATGCCTGTCGAGCGGTAGCGGCGACCGCAGCGGCAGAAGCAGCAATTTACCTGTGTG
CAGCTCTAAACTGGGAGGAAGATGCTAATTAAAGTGAAGACGCTGACGGGAAAGGAGATT
GAGATTGACATTGAACCCACAGACAAGGTGGAGCGAATCAAAGAGCGTGTGGAGGAGAAA
GAGGGAATTCCCCCACAGCAGCAGAGGCTCATCTACAGTGGTAAACAGATGAACGATGAG
AAGACAGCAGCTGATTACAAGATACTGGGTGGCTCCGTCCTCCACCTGGTGTTGGCTCTG
AGAGGAGGAGGTGGTCTTAGGCAGTGATGGACCCCCCCCCCTCCATTTTACCTCCTTGCC
CTGTCACTCATAATGAGGCATCATATATCCTCTCACTCTGTGGGACACCAGAGCCACCGC
CCCCCTCTCCTGGATGCCCAGTCTTGTGTGTCTACTGGTGGGAGACTGTGAGGACCCCAG
GATGCAGTGTTCCTGACCCAAAGGGCCTTTGCTGGCTGTTGGGTTTTAGTTTGCAGTCCT
GTGTGCTTCCCTCCCTTATGGCTATGTCCCAGGTTGTCAATAAAATATTTCCTGGCCTCC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGGAGATTGAGATTGACATTGAACCCACAGACAAGGTAATGTCTGCCCAGTACCTC
TCCATGCCTGTCGAGCGGTAGCGGCGACCGCAGCGGCAGAAGCAGCAATTTACCTGTGTG
CAGCTCTAAACTGGGAGGAAGATGCTAATTAAAGTGAAGACGCTGACGGGAAAGGAGATT
GAGATTGACATTGAACCCACAGACAAGGTGGAGCGAATCAAAGAGCGTGTGGAGGAGAAA
GAGGGAATTCCCCCACAGCAGCAGAGGCTCATCTACAGTGGTAAACAGATGAACGATGAG
AAGACAGCAGCTGATTACAAGATACTGGGTGGCTCCGTCCTCCACCTGGTGTTGGCTCTG
AGAGGAGGAGGTGGTCTTAGGCAGTGATGGACCCCCCCCCCTCCATTTTACCTCCTTGCC
CTGTCACTCATAATGAGGCATCATATATCCTCTCACTCTGTGGGACACCAGAGCCACCGC
CCCCCTCTCCTGGATGCCCAGTCTTGTGTGTCTACTGGTGGGAGACTGTGAGGACCCCAG
GATGCAGTGTTCCTGACCCAAAGGGCCTTTGCTGGCTGTTGGGTTTTAGTTTGCAGTCCT
GTGTGCTTCCCTCCCTTATGGCTATGTCCCAGGTTGTCAATAAAATATTTCCTGGCCTCC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               NEDD8_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               NEDD8_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               370-653, - strand, RNAz p=0.888392

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               370-653, - strand, RNAz p=0.888392

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               73-671, gnl|bosTau2|chr9 (38334780-38334196)
               

               
               73-671, gnl|Hg17|chr1 (84421969-84422563)
               

               
               73-671, gnl|Mm7|chr14 (50531213-50529615)
               


               
               291-661, gnl|bosTau2|chr10 (12275749-12276114)
               

               
               291-661, gnl|Hg17|chr14 (23756269-23755907)
               

               
               291-661, gnl|Mm7|chr14 (50529977-50529612)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-671, gnl|bosTau2|chr9 (38334780-38334196)
               

               
               73-671, gnl|Hg17|chr1 (84421969-84422563)
               

               
               73-671, gnl|Mm7|chr14 (50531213-50529615)
               


               
               291-661, gnl|bosTau2|chr10 (12275749-12276114)
               

               
               291-661, gnl|Hg17|chr14 (23756269-23755907)
               

               
               291-661, gnl|Mm7|chr14 (50529977-50529612)

Expressed library(ies): 45 entry(ies)

More info

Expressed library(ies): 45 entry(ies)

Help | Less info


               
               hlv (0.835538)
               

               
               fhi (0.678311)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               jca (0.45584)
               

               
               amn (0.417711)
               

               
               che (0.408942)
               

               
               pla (0.401016)
               

               
               cov (0.396458)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               nje (0.33184)
               

               
               cag (0.302389)
               

               
               nca (0.273748)
               

               
               cbr (0.255951)
               

               
               ese (0.253004)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 45 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.835538)
               

               
               fhi (0.678311)
               

               
               ton (0.526501)
               

               
               pro (0.512033)
               

               
               jca (0.45584)
               

               
               amn (0.417711)
               

               
               che (0.408942)
               

               
               pla (0.401016)
               

               
               cov (0.396458)
               

               
               col (0.390016)
               

               
               elu (0.385356)
               

               
               ill (0.351185)
               

               
               nje (0.33184)
               

               
               cag (0.302389)
               

               
               nca (0.273748)
               

               
               cbr (0.255951)
               

               
               ese (0.253004)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	73-671, gnl\|bosTau2\|chr9 (38334780-38334196)
	73-671, gnl\|Hg17\|chr1 (84421969-84422563)
	73-671, gnl\|Mm7\|chr14 (50531213-50529615)

	291-661, gnl\|bosTau2\|chr10 (12275749-12276114)
	291-661, gnl\|Hg17\|chr14 (23756269-23755907)
	291-661, gnl\|Mm7\|chr14 (50529977-50529612)

	hlv (0.835538)
	fhi (0.678311)
	ton (0.526501)
	pro (0.512033)
	jca (0.45584)
	amn (0.417711)
	che (0.408942)
	pla (0.401016)
	cov (0.396458)
	col (0.390016)
	elu (0.385356)
	ill (0.351185)
	nje (0.33184)
	cag (0.302389)
	nca (0.273748)
	cbr (0.255951)
	ese (0.253004)
	pgl (0.236967)
	ebs (0.236602)
	ecc (0.23007)
	nms (0.213858)
	mas (0.210305)
	hea (0.204499)
	jej (0.197844)
	fcc (0.197785)
	nlu (0.191681)
	cmu (0.186393)
	gul (0.177588)
	fbs (0.175346)
	sin (0.174948)
	duo (0.172801)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	csp (0.161186)
	cli (0.152812)
	hyp (0.142837)
	cst (0.140036)
	ssp (0.13552)
	nmm (0.132802)
	eep (0.122564)
	cly (0.120642)
	med (0.116252)
	nbm (0.0993246)
	eje (0.0988338)