Non-Coding RNA Search

Ss1.1-rhlv42b_h8.5

Sequence:


               
               CCGGCCCGGCGGGGACATGAGCTTCTTCGGTTTCGGGCAGAGCGTGGAGGTGGACATCCT
GCTGAACGATGCGGACAGCAGGAAGCGGGCCGAGCACAAGACGGAGGATGGGAAGAAGGA
CAAGTACTTCCTCTTCTACGATGGGGAGACGGTGTCCGGGAAGGTGAGCCTGGCGCTCAA
AAACCCCAACAAGCGGCTGGAGCACCAGGGGTATCAAGGTCGAGTTCATTGGGCAGATCG
AACTCTACTATGACCGTGGGAACCACCATGAGTTTGTGTCCCTGGTGAAGGACTTGGCCC
GGCCTGGAGAGATCACCCAGTCGCAGGCCTTCGACTTTGAGTTCACCCATGTGGAGAAGC
CATATGAGTCCTACACCGGGCAGAATGTGAAGCTGCGGTATTTCCTTCGTGCCACCATCA
GCCGCCGCCTCAACGATGTTGTCAAGGAGATGGACATCGTGGTCCACACGCTGAGCACGT
ACCCAGAGCTGAACTCGTCCATCAAGATGGAGGTCGGGATCGAGGACTGTCTGCACATTG
AGTTTGAGTACAACAAATCCAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCCCGGCGGGGACATGAGCTTCTTCGGTTTCGGGCAGAGCGTGGAGGTGGACATCCT
GCTGAACGATGCGGACAGCAGGAAGCGGGCCGAGCACAAGACGGAGGATGGGAAGAAGGA
CAAGTACTTCCTCTTCTACGATGGGGAGACGGTGTCCGGGAAGGTGAGCCTGGCGCTCAA
AAACCCCAACAAGCGGCTGGAGCACCAGGGGTATCAAGGTCGAGTTCATTGGGCAGATCG
AACTCTACTATGACCGTGGGAACCACCATGAGTTTGTGTCCCTGGTGAAGGACTTGGCCC
GGCCTGGAGAGATCACCCAGTCGCAGGCCTTCGACTTTGAGTTCACCCATGTGGAGAAGC
CATATGAGTCCTACACCGGGCAGAATGTGAAGCTGCGGTATTTCCTTCGTGCCACCATCA
GCCGCCGCCTCAACGATGTTGTCAAGGAGATGGACATCGTGGTCCACACGCTGAGCACGT
ACCCAGAGCTGAACTCGTCCATCAAGATGGAGGTCGGGATCGAGGACTGTCTGCACATTG
AGTTTGAGTACAACAAATCCAAGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-240, gnl|bosTau2|chr15 (53450460-53450698)
               

               
               1-240, gnl|Hg17|chr11 (133600211-133600449)
               

               
               1-240, gnl|Mm7|chr9 (26912691-26912452)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr15 (53450460-53450698)
               

               
               1-240, gnl|Hg17|chr11 (133600211-133600449)
               

               
               1-240, gnl|Mm7|chr9 (26912691-26912452)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.280073)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)
               

               
               hlv (0.139256)

	1-240, gnl\|bosTau2\|chr15 (53450460-53450698)
	1-240, gnl\|Hg17\|chr11 (133600211-133600449)
	1-240, gnl\|Mm7\|chr9 (26912691-26912452)