Non-Coding RNA Search

Ss1.1-rhyp01c_d6.5

Sequence:


               
               ACTGGGAACCTCCATATGCTCAACTTAAATTTTTGTTTATAACTTTATGAACACATACTA
TTTTTATTAACTGCGTTCACAAAATTGCTATTTCTTGCCTTGCCAAATTTGTAACTGAGT
CTCTGATGAAATGATAATACAGTCTCATATGAGGTCAGTGATCTCTAGATATGGGAAAAT
GCAACAAGAGGGAATATTTTCCTGGACCGTAACAGACTAGGAAGACAGGTGGTCCAGAGA
CGATTGGCTACTGTTAATAAGGCCTAGTCCAGCAATAGCACATTGAGTTGCCTGTCAGCT
AAATCTTTGCCAGATCTAGGAATATCCATTCCTAGCACCGTGGGACAAAATGGTCATGAT
ATGCCTCCCAAAACTATGGTCGAATTTATGACCGTGGGGGAGCGCTGGGCACTGGAGTTT
GGCCCTTGCCATCAGCCTCTACATGGAGTAAAACATGAGCCACTGCAGCTTCCGACCCGC
AACAGCCCCTGAGCAGAGCTCAGTGCGGAGACCAGGAGTGAGGCACTCGGTGCTAAGGGA
AAACTGACCAAACAGGCCTTCAGATAGTTAGATTGCAGGTAAGGATTTTTATGGGCCCAA
ATTCTTGCTTCTTCTCATATCTAGAAAAGCAGAAGTCATTAACAGTGGCATCTGCATTGG
CCATTAGAGAGAAAAGGCCGGATGGAGTAGCCGTGAGTCAGACACCCACGCCAAGGTGAT
ACTAGGAAATATTAAGGGAGTGATTTTCGACAAGACTTTGTATTGCTAAGAACTTCAGGT
TTATGTGCCCAGTCAGACTTGATGCCACCAGCTACCAATAGCTCCTGTTAATTATGTGTC
AATAGTACAGCAAATGTTAAAACCAACTTAGTTAAAACTACACACTTCCTTCAACAGTAC
CGGCGTCAACCTATATCACCAACCTCTGCTTAATCTTACTTTTTTCTTCCCATCCTCCAT
AGTAGGAACCTACCATGTCCAGTCCAGCCCCCCAGCACTCGTCGCCCCTGGCCAGCAGGA
AGTAGCTACGGAAGAGAGGACCGTCGCCCCATCCCATTTAAAAAAGGCTGGAATGATAGG
TTCCCAGGAAGATGGAGACAGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGGGAACCTCCATATGCTCAACTTAAATTTTTGTTTATAACTTTATGAACACATACTA
TTTTTATTAACTGCGTTCACAAAATTGCTATTTCTTGCCTTGCCAAATTTGTAACTGAGT
CTCTGATGAAATGATAATACAGTCTCATATGAGGTCAGTGATCTCTAGATATGGGAAAAT
GCAACAAGAGGGAATATTTTCCTGGACCGTAACAGACTAGGAAGACAGGTGGTCCAGAGA
CGATTGGCTACTGTTAATAAGGCCTAGTCCAGCAATAGCACATTGAGTTGCCTGTCAGCT
AAATCTTTGCCAGATCTAGGAATATCCATTCCTAGCACCGTGGGACAAAATGGTCATGAT
ATGCCTCCCAAAACTATGGTCGAATTTATGACCGTGGGGGAGCGCTGGGCACTGGAGTTT
GGCCCTTGCCATCAGCCTCTACATGGAGTAAAACATGAGCCACTGCAGCTTCCGACCCGC
AACAGCCCCTGAGCAGAGCTCAGTGCGGAGACCAGGAGTGAGGCACTCGGTGCTAAGGGA
AAACTGACCAAACAGGCCTTCAGATAGTTAGATTGCAGGTAAGGATTTTTATGGGCCCAA
ATTCTTGCTTCTTCTCATATCTAGAAAAGCAGAAGTCATTAACAGTGGCATCTGCATTGG
CCATTAGAGAGAAAAGGCCGGATGGAGTAGCCGTGAGTCAGACACCCACGCCAAGGTGAT
ACTAGGAAATATTAAGGGAGTGATTTTCGACAAGACTTTGTATTGCTAAGAACTTCAGGT
TTATGTGCCCAGTCAGACTTGATGCCACCAGCTACCAATAGCTCCTGTTAATTATGTGTC
AATAGTACAGCAAATGTTAAAACCAACTTAGTTAAAACTACACACTTCCTTCAACAGTAC
CGGCGTCAACCTATATCACCAACCTCTGCTTAATCTTACTTTTTTCTTCCCATCCTCCAT
AGTAGGAACCTACCATGTCCAGTCCAGCCCCCCAGCACTCGTCGCCCCTGGCCAGCAGGA
AGTAGCTACGGAAGAGAGGACCGTCGCCCCATCCCATTTAAAAAAGGCTGGAATGATAGG
TTCCCAGGAAGATGGAGACAGGAC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               92-631, gnl|bosTau2|chr7 (11650629-11650080)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-631, gnl|bosTau2|chr7 (11650629-11650080)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               ill (0.175593)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ese (0.126502)
               

               
               med (0.116252)

	ill (0.175593)
	spl (0.143184)
	hyp (0.142837)
	ese (0.126502)
	med (0.116252)