Non-Coding RNA Search

Ss1.1-rhyp01c_k8.5

Sequence:


               
               TGTTTATCTCTGTGTCAAAATACTTGCAAATTGGGAACACACTTCTCTCAGCTTCTTGAA
GCTGTTCAATTATCCTTGCCACCCAAGACCAAACAGGTTTTTACTGCCTTTTCTTTTGCT
TAATCCTTTGGGAATTAATTCTTACGCTTTTTACTACAAACAAAATTACTCACCTGGATT
AAAGATTAAGGCCTTAATCTCCTTAGATTATCTTTAATCTCCATAAAATTGTGGAACAAG
ACAGAAATAGGCCATTTTACAGCTAATTGCCCATAAATAGTAGCAGTTTTGACCTGAAGT
ACTAAGCTAATTGTCTTGACTACTCAAAGTCCCTGAATTGCTGTCAACTTTCCTCTTTGT
GTTGTGTATCCCTGACGTCACTTAGCTTGTTATCTGAAGCCTCCAGTCGGACACCTCCGA
TGGAGCTTTGATTTCTCAAGCAGTGAAAGCTCCCCTCCTCACACGCGTCTCCTGTAGGCT
GCCTATGATGAAGGACCAGACACCTCCACTCCTCCAGCGTGCTGGCTGAGTTTAAAAGCT
GACCTGTGTTTGTAATTTCACTTTCATCTTGCTTAATAAATATCTGCTGGATTCTTTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTATCTCTGTGTCAAAATACTTGCAAATTGGGAACACACTTCTCTCAGCTTCTTGAA
GCTGTTCAATTATCCTTGCCACCCAAGACCAAACAGGTTTTTACTGCCTTTTCTTTTGCT
TAATCCTTTGGGAATTAATTCTTACGCTTTTTACTACAAACAAAATTACTCACCTGGATT
AAAGATTAAGGCCTTAATCTCCTTAGATTATCTTTAATCTCCATAAAATTGTGGAACAAG
ACAGAAATAGGCCATTTTACAGCTAATTGCCCATAAATAGTAGCAGTTTTGACCTGAAGT
ACTAAGCTAATTGTCTTGACTACTCAAAGTCCCTGAATTGCTGTCAACTTTCCTCTTTGT
GTTGTGTATCCCTGACGTCACTTAGCTTGTTATCTGAAGCCTCCAGTCGGACACCTCCGA
TGGAGCTTTGATTTCTCAAGCAGTGAAAGCTCCCCTCCTCACACGCGTCTCCTGTAGGCT
GCCTATGATGAAGGACCAGACACCTCCACTCCTCCAGCGTGCTGGCTGAGTTTAAAAGCT
GACCTGTGTTTGTAATTTCACTTTCATCTTGCTTAATAAATATCTGCTGGATTCTTTCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-238, - strand, RNAz p=0.892094

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-238, - strand, RNAz p=0.892094

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr5 (54525484-54524890)
               

               
               1-600, gnl|Hg17|chr12 (16593235-16592624)
               

               
               1-600, gnl|Mm7|chr6 (138408460-138407898)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr5 (54525484-54524890)
               

               
               1-600, gnl|Hg17|chr12 (16593235-16592624)
               

               
               1-600, gnl|Mm7|chr6 (138408460-138407898)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               hyp (0.142837)

	1-600, gnl\|bosTau2\|chr5 (54525484-54524890)
	1-600, gnl\|Hg17\|chr12 (16593235-16592624)
	1-600, gnl\|Mm7\|chr6 (138408460-138407898)