Non-Coding RNA Search

Ss1.1-rhyp02c_o12.5

Sequence:


               
               GGGGCACTGGTGCATAACCTCAATGGTCCCTCTCCCCGGGGCCCTTGCAGAGGGCCACAT
CCATAAATTTTCTTATGGAACTCTCCCAAGTCATCTTCCGAAACTTCATTTGCTTCTCTC
AACACCTTCATCTGCATTTTCTATTTCTATATGATACAGACTCTATATTGCTATATCTCT
GTATATACTTTCCCTTGACTCCGTCTCTACTCCATCCCCTCTTGTCTCTAAGAACCACCC
TCCCACGCCAGGCTCCCCTTTCTGTGTTTCCACCCCGTCCCTGGTCTCTGAATGCCTTCG
CCTGTATAAAGAGTTGGACTCTCCCCTGGTGTCTGTACTGTGTACACACATCCCTCTAAG
AAGCACAAGGAGACGACACGCGCATTGTAACCTTCGCACTGTCTCGGTGGTGACATAAAG
GAAGCTGTGAATTACAAGCTCTGCCTCTTTCTGGCCTCACCCTCTCCCCCTAACCTGGGC
ACCCTCTGCCCTCCCTGCAGCCTTAACATTCCCTCCCTTGCTCCACCCACCCCAGTGTCC
TTTGCCTGGCTGACTGTGACCTCTCCAGGGAAGGGGGTTGCTACTGAGAGAGCCCCCTCC
CATGGGATGGAGATCTCTTCCGCACAATACGTCAAGGGGTGGCAAAGACAGAGGGAGCTG
AGGGTTGGGGACCCCTGCAGCTGAAGCAGCAGGGTGCTGACAGGTGGCAGCTGAGGTCTT
TAGTCAGTGGCCTTTCCCTCCTGGCTGCCCAGGCCCCTTTGCTCACCTAATACCCAAGCC
CACCACTTATATTTTCTGGTAAGGTATGGTTTGGTAGCGGGAGGAAAGAGACAGGCCTAG
AGGGGAAGTTAAAACTCTGCCGTTCTGTCCCTCCCTTCCTACTTTAATGAGAAACCTGTG
AGGCCAAGGACCTGCCGTGCCTCCTCCACCAGGCGCTCCCCTCAGGCCAGAGCGCTGCCT
CTTCCCAGGCCTTCTCTGCCCAGCTGTCTCTCAGTCTCCACCCCCAGAACAAGACCTGTG
GCAGGTCACCTGTGCATTGACCTGGAGCTGCAGGGTGAGGCTGTAGGATCTTTGGGAACT
CTGGGTTCCTGGGAACTCCTAGGAGATCAGACCTCTCCAGAGGGAAGCAGGAGCAAGGCC
AAAGGGTGTGCACCAGATGGGGAACAGCAGGCAGGGCTATGGGTGACGCATGTCTCTGGT
CTAATAAACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCACTGGTGCATAACCTCAATGGTCCCTCTCCCCGGGGCCCTTGCAGAGGGCCACAT
CCATAAATTTTCTTATGGAACTCTCCCAAGTCATCTTCCGAAACTTCATTTGCTTCTCTC
AACACCTTCATCTGCATTTTCTATTTCTATATGATACAGACTCTATATTGCTATATCTCT
GTATATACTTTCCCTTGACTCCGTCTCTACTCCATCCCCTCTTGTCTCTAAGAACCACCC
TCCCACGCCAGGCTCCCCTTTCTGTGTTTCCACCCCGTCCCTGGTCTCTGAATGCCTTCG
CCTGTATAAAGAGTTGGACTCTCCCCTGGTGTCTGTACTGTGTACACACATCCCTCTAAG
AAGCACAAGGAGACGACACGCGCATTGTAACCTTCGCACTGTCTCGGTGGTGACATAAAG
GAAGCTGTGAATTACAAGCTCTGCCTCTTTCTGGCCTCACCCTCTCCCCCTAACCTGGGC
ACCCTCTGCCCTCCCTGCAGCCTTAACATTCCCTCCCTTGCTCCACCCACCCCAGTGTCC
TTTGCCTGGCTGACTGTGACCTCTCCAGGGAAGGGGGTTGCTACTGAGAGAGCCCCCTCC
CATGGGATGGAGATCTCTTCCGCACAATACGTCAAGGGGTGGCAAAGACAGAGGGAGCTG
AGGGTTGGGGACCCCTGCAGCTGAAGCAGCAGGGTGCTGACAGGTGGCAGCTGAGGTCTT
TAGTCAGTGGCCTTTCCCTCCTGGCTGCCCAGGCCCCTTTGCTCACCTAATACCCAAGCC
CACCACTTATATTTTCTGGTAAGGTATGGTTTGGTAGCGGGAGGAAAGAGACAGGCCTAG
AGGGGAAGTTAAAACTCTGCCGTTCTGTCCCTCCCTTCCTACTTTAATGAGAAACCTGTG
AGGCCAAGGACCTGCCGTGCCTCCTCCACCAGGCGCTCCCCTCAGGCCAGAGCGCTGCCT
CTTCCCAGGCCTTCTCTGCCCAGCTGTCTCTCAGTCTCCACCCCCAGAACAAGACCTGTG
GCAGGTCACCTGTGCATTGACCTGGAGCTGCAGGGTGAGGCTGTAGGATCTTTGGGAACT
CTGGGTTCCTGGGAACTCCTAGGAGATCAGACCTCTCCAGAGGGAAGCAGGAGCAAGGCC
AAAGGGTGTGCACCAGATGGGGAACAGCAGGCAGGGCTATGGGTGACGCATGTCTCTGGT
CTAATAAACTGG

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               2-160, - strand, RNAz p=0.993214
               

               
               463-694, - strand, RNAz p=0.932826
               

               
               735-849, - strand, RNAz p=0.996179
               

               
               889-1002, - strand, RNAz p=0.995154
               

               
               1040-1158, - strand, RNAz p=0.542859

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-160, - strand, RNAz p=0.993214
               

               
               463-694, - strand, RNAz p=0.932826
               

               
               735-849, - strand, RNAz p=0.996179
               

               
               889-1002, - strand, RNAz p=0.995154
               

               
               1040-1158, - strand, RNAz p=0.542859

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               578-640, + strand, RNAmicro p=0.960651

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               578-640, + strand, RNAmicro p=0.960651

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               10-160, UI-H-FG1-bgi-p-09-0-UI.s1 NCI_CGAP_FG1 Homo sapiens cDNA clone 
(gb|BU624749.1|), blast E-value=0, identity=91.39% 
               

               
               2-160, LB02515.CR_B07 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV871551.1|), 
blast E-value=0, identity=91.19% 
               

               
               2-160, 000209BCXB007923HT BCXB Bos taurus cDNA, mRNA sequence (gb|DY070666.1|), 
blast E-value=0, identity=91.19% 
               

               
               2-160, 000209BCXB007684HT BCXB Bos taurus cDNA, mRNA sequence (gb|DY146125.1|), 
blast E-value=0, identity=91.19% 
               

               
               2-160, 000206BCXB005283HT BCXB Bos taurus cDNA, mRNA sequence (gb|DY212332.1|), 
blast E-value=0, identity=91.19% 
               

               
               2-160, 1588259 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY458186.1|), 
blast E-value=0, identity=91.82%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               10-160, UI-H-FG1-bgi-p-09-0-UI.s1 NCI_CGAP_FG1 Homo sapiens cDNA clone 
(gb|BU624749.1|), blast E-value=0, identity=91.39% 
               

               
               2-160, LB02515.CR_B07 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV871551.1|), 
blast E-value=0, identity=91.19% 
               

               
               2-160, 000209BCXB007923HT BCXB Bos taurus cDNA, mRNA sequence (gb|DY070666.1|), 
blast E-value=0, identity=91.19% 
               

               
               2-160, 000209BCXB007684HT BCXB Bos taurus cDNA, mRNA sequence (gb|DY146125.1|), 
blast E-value=0, identity=91.19% 
               

               
               2-160, 000206BCXB005283HT BCXB Bos taurus cDNA, mRNA sequence (gb|DY212332.1|), 
blast E-value=0, identity=91.19% 
               

               
               2-160, 1588259 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY458186.1|), 
blast E-value=0, identity=91.82%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1212, gnl|bosTau2|chr5 (23047214-23046021)
               

               
               2-1212, gnl|Hg17|chr12 (48762454-48763651)
               

               
               2-1212, gnl|Mm7|chr15 (99685144-99686363)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1212, gnl|bosTau2|chr5 (23047214-23046021)
               

               
               2-1212, gnl|Hg17|chr12 (48762454-48763651)
               

               
               2-1212, gnl|Mm7|chr15 (99685144-99686363)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)

	2-160, - strand, RNAz p=0.993214
	463-694, - strand, RNAz p=0.932826
	735-849, - strand, RNAz p=0.996179
	889-1002, - strand, RNAz p=0.995154
	1040-1158, - strand, RNAz p=0.542859

	10-160, UI-H-FG1-bgi-p-09-0-UI.s1 NCI_CGAP_FG1 Homo sapiens cDNA clone (gb\|BU624749.1\|), blast E-value=0, identity=91.39%
	2-160, LB02515.CR_B07 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV871551.1\|), blast E-value=0, identity=91.19%
	2-160, 000209BCXB007923HT BCXB Bos taurus cDNA, mRNA sequence (gb\|DY070666.1\|), blast E-value=0, identity=91.19%
	2-160, 000209BCXB007684HT BCXB Bos taurus cDNA, mRNA sequence (gb\|DY146125.1\|), blast E-value=0, identity=91.19%
	2-160, 000206BCXB005283HT BCXB Bos taurus cDNA, mRNA sequence (gb\|DY212332.1\|), blast E-value=0, identity=91.19%
	2-160, 1588259 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb\|DY458186.1\|), blast E-value=0, identity=91.82%

	2-1212, gnl\|bosTau2\|chr5 (23047214-23046021)
	2-1212, gnl\|Hg17\|chr12 (48762454-48763651)
	2-1212, gnl\|Mm7\|chr15 (99685144-99686363)