Non-Coding RNA Search

Ss1.1-rhyp02c_o7.5

Sequence:


               
               GGACGAGCAGTGATGTATCTCTATAAACACCCCAAGGAGTCAAGGTCCAACAAGGACATG
GCAGGGAAATTAATCAATGAATGGTCCCGGCCTATATTTGGTCTTACCTCAAACTACAAA
GGAATGACAAGAGAAGAAAGGGAGCAAAGGGATCTAGAACAGATGCCTCAACGGCGAAGA
ATGAGCAGCACTGGTGGTCAGACACCACGAAGAGATCTGGAAAAGGTGCTGACAGGAGAG
GAAAAGGCTCTTAGACCTGGAGATCCTGGATTCTGTGCCCGGGCAAGGGTCCCCATGCCC
TCCAACAAGGACTATGTTGTCAGGCCCAAGTGGAATGTGGAAATGGAGTCATCCAGGTTT
CAGGGGAGCTCCAAGAAGGGTATCAGTCGACTGGATAAACAGATGAGAAAGTTCACAGAC
ATCAGGAAAAAAAGCAGATCTGCACATGCAGTAAAAATCAGCATCGAGGGCAATAAAATG
CCACTGTGACTTTACCTGGGATGTTTCCTCATCTCTACTCTAAAGAATGCGTGATGGACT
CTTTGGAGAAAGATATTTTAAGAAAATTTTTAGTGAAACTGTAAATGATTGAGCTTGTAT
CAAATGTTGTCATAGGACCCGCATTTCTCTCGGTTGTATTTAAAACCATTTGTTGTGCAC
TTTGTACAGAGGAATACTAGTCATACTTCTATAAACTTTACACAATAAAATTCCATTCTG
GTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACGAGCAGTGATGTATCTCTATAAACACCCCAAGGAGTCAAGGTCCAACAAGGACATG
GCAGGGAAATTAATCAATGAATGGTCCCGGCCTATATTTGGTCTTACCTCAAACTACAAA
GGAATGACAAGAGAAGAAAGGGAGCAAAGGGATCTAGAACAGATGCCTCAACGGCGAAGA
ATGAGCAGCACTGGTGGTCAGACACCACGAAGAGATCTGGAAAAGGTGCTGACAGGAGAG
GAAAAGGCTCTTAGACCTGGAGATCCTGGATTCTGTGCCCGGGCAAGGGTCCCCATGCCC
TCCAACAAGGACTATGTTGTCAGGCCCAAGTGGAATGTGGAAATGGAGTCATCCAGGTTT
CAGGGGAGCTCCAAGAAGGGTATCAGTCGACTGGATAAACAGATGAGAAAGTTCACAGAC
ATCAGGAAAAAAAGCAGATCTGCACATGCAGTAAAAATCAGCATCGAGGGCAATAAAATG
CCACTGTGACTTTACCTGGGATGTTTCCTCATCTCTACTCTAAAGAATGCGTGATGGACT
CTTTGGAGAAAGATATTTTAAGAAAATTTTTAGTGAAACTGTAAATGATTGAGCTTGTAT
CAAATGTTGTCATAGGACCCGCATTTCTCTCGGTTGTATTTAAAACCATTTGTTGTGCAC
TTTGTACAGAGGAATACTAGTCATACTTCTATAAACTTTACACAATAAAATTCCATTCTG
GTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12840232|dbj|BAB24793.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12840232|dbj|BAB24793.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               396-515, - strand, RNAz p=0.874197

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               396-515, - strand, RNAz p=0.874197

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               77-188, gnl|bosTau2|chr2 (3814672-3814783)
               

               
               77-188, gnl|Hg17|chr2 (127963749-127963638)
               

               
               77-188, gnl|Mm7|chr18 (32482507-32482618)
               


               
               357-724, gnl|bosTau2|chr2 (3825256-3825621)
               

               
               357-724, gnl|Hg17|chr2 (127954982-127954616)
               

               
               357-724, gnl|Mm7|chr18 (32489227-32489595)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-188, gnl|bosTau2|chr2 (3814672-3814783)
               

               
               77-188, gnl|Hg17|chr2 (127963749-127963638)
               

               
               77-188, gnl|Mm7|chr18 (32482507-32482618)
               


               
               357-724, gnl|bosTau2|chr2 (3825256-3825621)
               

               
               357-724, gnl|Hg17|chr2 (127954982-127954616)
               

               
               357-724, gnl|Mm7|chr18 (32489227-32489595)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cbe (0.478469)
               

               
               che (0.408942)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               che (0.408942)
               

               
               vin (0.332557)
               

               
               cje (0.330469)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               spc (0.113366)

	77-188, gnl\|bosTau2\|chr2 (3814672-3814783)
	77-188, gnl\|Hg17\|chr2 (127963749-127963638)
	77-188, gnl\|Mm7\|chr18 (32482507-32482618)

	357-724, gnl\|bosTau2\|chr2 (3825256-3825621)
	357-724, gnl\|Hg17\|chr2 (127954982-127954616)
	357-724, gnl\|Mm7\|chr18 (32489227-32489595)

	cbe (0.478469)
	che (0.408942)
	vin (0.332557)
	cje (0.330469)
	aor (0.195274)
	cmu (0.186393)
	fbs (0.175346)
	cut (0.169924)
	bfe (0.149858)
	hyp (0.142837)
	lyg (0.133103)
	bla (0.124347)
	eep (0.122564)
	spc (0.113366)