Non-Coding RNA Search

Ss1.1-rhyp03c_j3.5

Sequence:


               
               AGCTGGGGACCGGGAGGGAAGGAAGGGCAGCGGGTGAGCGAAGGGGCGGGACCCTGGCTG
CTGTGGCCTCCCCTGACCCCCTCCCTCTAAAGGGCGGACTGGGGTTGACTCCGGGGGCGC
GGCGAGGAGAGACATGAGGCTGAGCTGGGTCCTGACAGTACTGTCCATCTGCCTGAGCGC
CCTGGTCACGGCCACGGGGGCCGAGGGCAAACGGAAGCTGCAGATCGGAGTCAAGAAACG
GGTAGACCACTGTCCCATCAAGTCGCGCAAGGGGGATGTCTTGCACATGCACTACACGGG
GAAGCTGGAAGATGGGACGGAGTTTGACAGCAGCCTGCCCCAGAACCAGCCCTTTGTCTT
CTCCCTGGGCACAGGCCAGGTCATCAAGGGCTGGGACCAGGGGCTGCTAGGGATGTGTGA
GGGGGAAAAGCGGAAGCTGGTGATCCCATCAGAGCTGGGGTATGGAGAGCGGGGAGCTCC
CCCAAAGATTCCAGGTGGTGCAACCTTGGTGTTCGAGGTGGAACTGCTCAAAATCGAACG
ACGTTCAGAGCTATAGCCAAACTGGGGAGGGGCGGTGGAGAGGCCCCCAGCAGGGACCAA
GCTGTTTAAAACAAGAAAAAACCTTAAAGCCCAAAAGGCTGCTTCAGCTTCTGCATTGAT
CTCCATTCAGTACCTGCCTCTTCCAAGTCTAGCTGTGTCCAGCAGTGGGGTCAGGGCAAG
GCCCTTGGGACAGCTGCCTCTGGTGCCCATTTTCTGCCCTCTGCAAGACCTCTTGCAGCC
CCTTCTCATCTCCATTACACCTTCTCCATTTCTAGCCTTGGGCTGCGATGGGCAGAGGCT
TGCCTTCAGCCTGGCTGTCTGCAGAACACTTAGCTACAACTCACTTTGTTTCTTTATGCA
TCTTTGACAGGGTATGGAGAGCGGGGAGCTCCCCCAAAGATTCCAGGTGGTGCAACCTTG
GTGTTCGAGGTGGAACTGCTCAAAATCGAACGACGTTCAGAGCTATAGCCAAACTGGGGA
GGGGCGGTGGAGAGGCCCCCAGCAGGGACCAAGCTGTTTAAAACAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGGGGACCGGGAGGGAAGGAAGGGCAGCGGGTGAGCGAAGGGGCGGGACCCTGGCTG
CTGTGGCCTCCCCTGACCCCCTCCCTCTAAAGGGCGGACTGGGGTTGACTCCGGGGGCGC
GGCGAGGAGAGACATGAGGCTGAGCTGGGTCCTGACAGTACTGTCCATCTGCCTGAGCGC
CCTGGTCACGGCCACGGGGGCCGAGGGCAAACGGAAGCTGCAGATCGGAGTCAAGAAACG
GGTAGACCACTGTCCCATCAAGTCGCGCAAGGGGGATGTCTTGCACATGCACTACACGGG
GAAGCTGGAAGATGGGACGGAGTTTGACAGCAGCCTGCCCCAGAACCAGCCCTTTGTCTT
CTCCCTGGGCACAGGCCAGGTCATCAAGGGCTGGGACCAGGGGCTGCTAGGGATGTGTGA
GGGGGAAAAGCGGAAGCTGGTGATCCCATCAGAGCTGGGGTATGGAGAGCGGGGAGCTCC
CCCAAAGATTCCAGGTGGTGCAACCTTGGTGTTCGAGGTGGAACTGCTCAAAATCGAACG
ACGTTCAGAGCTATAGCCAAACTGGGGAGGGGCGGTGGAGAGGCCCCCAGCAGGGACCAA
GCTGTTTAAAACAAGAAAAAACCTTAAAGCCCAAAAGGCTGCTTCAGCTTCTGCATTGAT
CTCCATTCAGTACCTGCCTCTTCCAAGTCTAGCTGTGTCCAGCAGTGGGGTCAGGGCAAG
GCCCTTGGGACAGCTGCCTCTGGTGCCCATTTTCTGCCCTCTGCAAGACCTCTTGCAGCC
CCTTCTCATCTCCATTACACCTTCTCCATTTCTAGCCTTGGGCTGCGATGGGCAGAGGCT
TGCCTTCAGCCTGGCTGTCTGCAGAACACTTAGCTACAACTCACTTTGTTTCTTTATGCA
TCTTTGACAGGGTATGGAGAGCGGGGAGCTCCCCCAAAGATTCCAGGTGGTGCAACCTTG
GTGTTCGAGGTGGAACTGCTCAAAATCGAACGACGTTCAGAGCTATAGCCAAACTGGGGA
GGGGCGGTGGAGAGGCCCCCAGCAGGGACCAAGCTGTTTAAAACAAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61846217|ref|XP_584136.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61846217|ref|XP_584136.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               299-417, - strand, RNAz p=0.864788

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               299-417, - strand, RNAz p=0.864788

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               142-621, gnl|bosTau2|chr1 (15785231-15784752)
               

               
               142-621, gnl|Hg17|chr11 (63766450-63768143)
               

               
               142-621, gnl|Mm7|chr19 (6798993-6797621)
               


               
               909-1068, gnl|bosTau2|chr1 (15784916-15784757)
               

               
               909-1068, gnl|Hg17|chr11 (63767887-63768138)
               

               
               909-1068, gnl|Mm7|chr19 (6797912-6797626)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-621, gnl|bosTau2|chr1 (15785231-15784752)
               

               
               142-621, gnl|Hg17|chr11 (63766450-63768143)
               

               
               142-621, gnl|Mm7|chr19 (6798993-6797621)
               


               
               909-1068, gnl|bosTau2|chr1 (15784916-15784757)
               

               
               909-1068, gnl|Hg17|chr11 (63767887-63768138)
               

               
               909-1068, gnl|Mm7|chr19 (6797912-6797626)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               hyp (0.571347)
               

               
               fhi (0.508733)
               

               
               nms (0.427716)
               

               
               nmm (0.398406)
               

               
               jej (0.395687)
               

               
               fcc (0.39557)
               

               
               nje (0.33184)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.571347)
               

               
               fhi (0.508733)
               

               
               nms (0.427716)
               

               
               nmm (0.398406)
               

               
               jej (0.395687)
               

               
               fcc (0.39557)
               

               
               nje (0.33184)
               

               
               cli (0.305623)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               nbm (0.198649)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               cje (0.165235)
               

               
               pty (0.142714)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	142-621, gnl\|bosTau2\|chr1 (15785231-15784752)
	142-621, gnl\|Hg17\|chr11 (63766450-63768143)
	142-621, gnl\|Mm7\|chr19 (6798993-6797621)

	909-1068, gnl\|bosTau2\|chr1 (15784916-15784757)
	909-1068, gnl\|Hg17\|chr11 (63767887-63768138)
	909-1068, gnl\|Mm7\|chr19 (6797912-6797626)

	hyp (0.571347)
	fhi (0.508733)
	nms (0.427716)
	nmm (0.398406)
	jej (0.395687)
	fcc (0.39557)
	nje (0.33184)
	cli (0.305623)
	cga (0.279096)
	hlv (0.278513)
	pgl (0.236967)
	med (0.232504)
	ece (0.229305)
	jca (0.22792)
	mas (0.210305)
	nbm (0.198649)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	mcp (0.170648)
	cje (0.165235)
	pty (0.142714)
	ute (0.132784)
	eep (0.122564)
	ebs (0.118301)
	ecc (0.115035)