Non-Coding RNA Search

Ss1.1-rhyp04c_o12.5

Sequence:


               
               GTTCTTTCAACTGTATGCTCATATAGAAATTCCCCAGCCTTAGACACAAGAAGGCTGGGA
GGAAGAGTCCCATCTATGAAGGTTGCTAATTTTTGTTAAGGACAAGGTACAATCCAGGGC
CATACAGCTGTGAAGGACTTTGTGGAAAGAACACAGGAGGATTACCTTCTGAAGCCAGTG
TTGGTGATAAGAAAATAAAAATACCAGTTTGTGCTTCATTAAAGTGAACTAATCCTTCTA
AGCAGAGAATGAAAACCTGACTTCCCCAGCAGCTGCCACATATGCGTGTGTAGACTATGC
AATACACAATTCCAAGGAATAGTGTAAAGTGACATAGCGTCCCGTGCTTCTGCTGGTGGA
AATAATTTTGCTCTAAAATATAAATCAATCTTGAAGTGATCTACCACCAAAATCAGACTA
GGAAACCAGTATGGAATGCATTACACAATACTCCTTCCTCTAAAGGCATGATCTTCATGA
ACCATGGCATTCAGCCCTAGGATCCCATAAGTCCTTCAGAAGGACTAATCATGGAAGAAT
TTTTGTCTAAGGATTAGAAATGCATTTATTTTCAAGTAAGATAAGACTAGTGTGAATCTT
ATTGATGAATGACAGATACTGCTATTAGGTGATACCTTTATCTTCGTTAACTTGTTTCAG
TACACCCGTAAGCATTTCTGACAGTTAGATCCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTTTCAACTGTATGCTCATATAGAAATTCCCCAGCCTTAGACACAAGAAGGCTGGGA
GGAAGAGTCCCATCTATGAAGGTTGCTAATTTTTGTTAAGGACAAGGTACAATCCAGGGC
CATACAGCTGTGAAGGACTTTGTGGAAAGAACACAGGAGGATTACCTTCTGAAGCCAGTG
TTGGTGATAAGAAAATAAAAATACCAGTTTGTGCTTCATTAAAGTGAACTAATCCTTCTA
AGCAGAGAATGAAAACCTGACTTCCCCAGCAGCTGCCACATATGCGTGTGTAGACTATGC
AATACACAATTCCAAGGAATAGTGTAAAGTGACATAGCGTCCCGTGCTTCTGCTGGTGGA
AATAATTTTGCTCTAAAATATAAATCAATCTTGAAGTGATCTACCACCAAAATCAGACTA
GGAAACCAGTATGGAATGCATTACACAATACTCCTTCCTCTAAAGGCATGATCTTCATGA
ACCATGGCATTCAGCCCTAGGATCCCATAAGTCCTTCAGAAGGACTAATCATGGAAGAAT
TTTTGTCTAAGGATTAGAAATGCATTTATTTTCAAGTAAGATAAGACTAGTGTGAATCTT
ATTGATGAATGACAGATACTGCTATTAGGTGATACCTTTATCTTCGTTAACTTGTTTCAG
TACACCCGTAAGCATTTCTGACAGTTAGATCCCTAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-296, gnl|bosTau2|chr8 (61660574-61660866)
               

               
               2-296, gnl|Hg17|chr9 (120444954-120444665)
               

               
               2-296, gnl|Mm7|chr4 (69864837-69864474)
               


               
               335-685, gnl|bosTau2|chr8 (61661197-61661523)
               

               
               335-685, gnl|Hg17|chr9 (120444332-120443675)
               

               
               335-685, gnl|Mm7|chr4 (69864156-69863834)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-296, gnl|bosTau2|chr8 (61660574-61660866)
               

               
               2-296, gnl|Hg17|chr9 (120444954-120444665)
               

               
               2-296, gnl|Mm7|chr4 (69864837-69864474)
               


               
               335-685, gnl|bosTau2|chr8 (61661197-61661523)
               

               
               335-685, gnl|Hg17|chr9 (120444332-120443675)
               

               
               335-685, gnl|Mm7|chr4 (69864156-69863834)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               cty (0.10408)

	2-296, gnl\|bosTau2\|chr8 (61660574-61660866)
	2-296, gnl\|Hg17\|chr9 (120444954-120444665)
	2-296, gnl\|Mm7\|chr4 (69864837-69864474)

	335-685, gnl\|bosTau2\|chr8 (61661197-61661523)
	335-685, gnl\|Hg17\|chr9 (120444332-120443675)
	335-685, gnl\|Mm7\|chr4 (69864156-69863834)