Ss1.1-rhyp05c_g23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCTCGGAACCGGACGCTGCCCGACCTCTCCGAGGCAGGGCCCTTCCAGGGGCAGCCA GTGGGCCCTGGCCTACGGCCCACTGAGGACACCAAGGGCCCCTTTGGCAGGTCCCTCAGC ACTGGCCGGCTCACTGATCTACTCCTTAAGGCTGCATTTGGGACGCAGGCCCCTGACTCA GGCAGCACGGACAGCCTGCAGGAAAAGCCCATGGAGATCGCACCCTCTGCTGGCTTCGGA GGGAACCTGCACCCAGGAGCCCGTGCTGCGGGGGCCAGCAGCCCTTCCCCCGTGGTGTTC ACCGTGGGCTCGCCCCCCAGCGGGACCACGCCACCCCAGGGCCCCCGCACCACCATGTTC TCAGTGGGCTCCTCCAGCTCCCTCAGCTCAGCTGGCTCCTCCTCTGCCCGCCACCTGGCG CCTGGGGCCTACAGTGAGGCCACTCTCGAGGTCCCAGCCCCTGGCCACTGCTGCAGCTTC GCTGACCCTGTCACTGCCAACCTGGAGGGGGCCGTGACCTTCGAGGCCCCTGATCTTCCC GAGGAGACTCTCATGGAGCAAGAGCACACGGAGATCCTGCACAGCCTGCGCTTCACACTC GTCTTCGTCCAGCACGTCCTGGAGATTGCGGCCCTGAAGGGCAGTGCCAGTGAGGCAGCT GGGGGGCCTGAGTACCAGCTGCAGGAGAGCGTGGTGGCCGACCAGATCAGCCTGCTGAGC CGCGAGTGGGGCTTCGCAGAGCAGCTGGTGCTCTACCTAAAGGTGGCTGAGCTCCTCTCC TCGGGCCTGCAGACCGCCATTGACCAGATCCGGGCTGGCAAGCTCTGCCTGTCCTCCACC GTGAAGCACGTGGTTCGGAAGCTGAACGAGCTCTATAAGACCAGCGTGGTGTCCTGCCAA GGCCTGAGCCTGCGGCTGCAGCGCTTCTTCCTGGACAAGCAGCGACTCCTGGACCGCATC CAGAGCGTCACGGCAGAGAAGCTCATCTTCAGCCATGCAGTGCAGACGGTACAGTCGGCT GCCCTGGATGAGATGTTCCACCGTCGGGAGGACTGTGTCCAGCGCTACCACAAGGCCCTG CTGCTCATGGAGGGGCTGCAGCAGATCCTCACAGACCAGGCGGACGTGGAGAACATCGCC AAGTGCAAGCTGTGCATCGAGCGAAGGCTCTCGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCTCGGAACCGGACGCTGCCCGACCTCTCCGAGGCAGGGCCCTTCCAGGGGCAGCCA GTGGGCCCTGGCCTACGGCCCACTGAGGACACCAAGGGCCCCTTTGGCAGGTCCCTCAGC ACTGGCCGGCTCACTGATCTACTCCTTAAGGCTGCATTTGGGACGCAGGCCCCTGACTCA GGCAGCACGGACAGCCTGCAGGAAAAGCCCATGGAGATCGCACCCTCTGCTGGCTTCGGA GGGAACCTGCACCCAGGAGCCCGTGCTGCGGGGGCCAGCAGCCCTTCCCCCGTGGTGTTC ACCGTGGGCTCGCCCCCCAGCGGGACCACGCCACCCCAGGGCCCCCGCACCACCATGTTC TCAGTGGGCTCCTCCAGCTCCCTCAGCTCAGCTGGCTCCTCCTCTGCCCGCCACCTGGCG CCTGGGGCCTACAGTGAGGCCACTCTCGAGGTCCCAGCCCCTGGCCACTGCTGCAGCTTC GCTGACCCTGTCACTGCCAACCTGGAGGGGGCCGTGACCTTCGAGGCCCCTGATCTTCCC GAGGAGACTCTCATGGAGCAAGAGCACACGGAGATCCTGCACAGCCTGCGCTTCACACTC GTCTTCGTCCAGCACGTCCTGGAGATTGCGGCCCTGAAGGGCAGTGCCAGTGAGGCAGCT GGGGGGCCTGAGTACCAGCTGCAGGAGAGCGTGGTGGCCGACCAGATCAGCCTGCTGAGC CGCGAGTGGGGCTTCGCAGAGCAGCTGGTGCTCTACCTAAAGGTGGCTGAGCTCCTCTCC TCGGGCCTGCAGACCGCCATTGACCAGATCCGGGCTGGCAAGCTCTGCCTGTCCTCCACC GTGAAGCACGTGGTTCGGAAGCTGAACGAGCTCTATAAGACCAGCGTGGTGTCCTGCCAA GGCCTGAGCCTGCGGCTGCAGCGCTTCTTCCTGGACAAGCAGCGACTCCTGGACCGCATC CAGAGCGTCACGGCAGAGAAGCTCATCTTCAGCCATGCAGTGCAGACGGTACAGTCGGCT GCCCTGGATGAGATGTTCCACCGTCGGGAGGACTGTGTCCAGCGCTACCACAAGGCCCTG CTGCTCATGGAGGGGCTGCAGCAGATCCTCACAGACCAGGCGGACGTGGAGAACATCGCC AAGTGCAAGCTGTGCATCGAGCGAAGGCTCTCGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 338-480, - strand, RNAz p=0.996276 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 338-480, - strand, RNAz p=0.996276 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 107-218, gnl|bosTau2|chr17 (23762528-23762417) | |
| 107-218, gnl|canFam2|chr26 (3975220-3975106) | |
| 107-218, gnl|danRer3|chr8 (38305814-38305706) | |
| 107-218, gnl|echTel1|scaffold_38092 (258-373) | |
| 107-218, gnl|fr1|chrUn (159688771-159688873) | |
| 107-218, gnl|galGal2|chr15 (2614310-2614189) | |
| 107-218, gnl|hg17|chr12 (131067726-131067841) | |
| 107-218, gnl|Hg17|chr12 (131067724-131067835) | |
| 107-218, gnl|loxAfr1|scaffold_66576 (10012-9897) | |
| 107-218, gnl|mm7|chr5 (109955269-109955154) | |
| 107-218, gnl|Mm7|chr5 (109955269-109955158) | |
| 107-218, gnl|monDom2|scaffold_54 (4170076-4169961) | |
| 107-218, gnl|rheMac2|chr11 (133217360-133217475) | |
| 107-218, gnl|rn3|chr12 (45882027-45882142) | |
| 107-218, gnl|xenTro1|scaffold_322 (920221-920342) | |
| 338-558, gnl|bosTau2|chr17 (23761781-23761556) | |
| 338-558, gnl|Hg17|chr12 (131069230-131069456) | |
| 338-558, gnl|Mm7|chr5 (109954543-109954318) | |
| 850-1012, gnl|bosTau2|chr17 (23760853-23760691) | |
| 850-1012, gnl|canFam2|chr26 (3973601-3973486) | |
| 850-1012, gnl|danRer3|chr8 (38300112-38299997) | |
| 850-1012, gnl|dasNov1|scaffold_77068 (7738-7623) | |
| 850-1012, gnl|echTel1|scaffold_284528 (47488-47373) | |
| 850-1012, gnl|fr1|chrUn (159690069-159690184) | |
| 850-1012, gnl|galGal2|chr15 (2605440-2605325) | |
| 850-1012, gnl|hg17|chr12 (131070753-131070868) | |
| 850-1012, gnl|Hg17|chr12 (131070753-131070915) | |
| 850-1012, gnl|loxAfr1|scaffold_136124 (4666-4781) | |
| 850-1012, gnl|mm7|chr5 (109953452-109953337) | |
| 850-1012, gnl|Mm7|chr5 (109953450-109953288) | |
| 850-1012, gnl|monDom2|scaffold_54 (4161435-4161320) | |
| 850-1012, gnl|oryCun1|scaffold_179941 (13502-13617) | |
| 850-1012, gnl|rheMac2|chr11 (133219719-133219834) | |
| 850-1012, gnl|rn3|chr12 (45883873-45883988) | |
| 850-1012, gnl|tetNig1|chrUn_random (33508908-33509023) | |
| 850-1012, gnl|xenTro1|scaffold_322 (925725-925840) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 107-218, gnl|bosTau2|chr17 (23762528-23762417) | |
| 107-218, gnl|canFam2|chr26 (3975220-3975106) | |
| 107-218, gnl|danRer3|chr8 (38305814-38305706) | |
| 107-218, gnl|echTel1|scaffold_38092 (258-373) | |
| 107-218, gnl|fr1|chrUn (159688771-159688873) | |
| 107-218, gnl|galGal2|chr15 (2614310-2614189) | |
| 107-218, gnl|hg17|chr12 (131067726-131067841) | |
| 107-218, gnl|Hg17|chr12 (131067724-131067835) | |
| 107-218, gnl|loxAfr1|scaffold_66576 (10012-9897) | |
| 107-218, gnl|mm7|chr5 (109955269-109955154) | |
| 107-218, gnl|Mm7|chr5 (109955269-109955158) | |
| 107-218, gnl|monDom2|scaffold_54 (4170076-4169961) | |
| 107-218, gnl|rheMac2|chr11 (133217360-133217475) | |
| 107-218, gnl|rn3|chr12 (45882027-45882142) | |
| 107-218, gnl|xenTro1|scaffold_322 (920221-920342) | |
| 338-558, gnl|bosTau2|chr17 (23761781-23761556) | |
| 338-558, gnl|Hg17|chr12 (131069230-131069456) | |
| 338-558, gnl|Mm7|chr5 (109954543-109954318) | |
| 850-1012, gnl|bosTau2|chr17 (23760853-23760691) | |
| 850-1012, gnl|canFam2|chr26 (3973601-3973486) | |
| 850-1012, gnl|danRer3|chr8 (38300112-38299997) | |
| 850-1012, gnl|dasNov1|scaffold_77068 (7738-7623) | |
| 850-1012, gnl|echTel1|scaffold_284528 (47488-47373) | |
| 850-1012, gnl|fr1|chrUn (159690069-159690184) | |
| 850-1012, gnl|galGal2|chr15 (2605440-2605325) | |
| 850-1012, gnl|hg17|chr12 (131070753-131070868) | |
| 850-1012, gnl|Hg17|chr12 (131070753-131070915) | |
| 850-1012, gnl|loxAfr1|scaffold_136124 (4666-4781) | |
| 850-1012, gnl|mm7|chr5 (109953452-109953337) | |
| 850-1012, gnl|Mm7|chr5 (109953450-109953288) | |
| 850-1012, gnl|monDom2|scaffold_54 (4161435-4161320) | |
| 850-1012, gnl|oryCun1|scaffold_179941 (13502-13617) | |
| 850-1012, gnl|rheMac2|chr11 (133219719-133219834) | |
| 850-1012, gnl|rn3|chr12 (45883873-45883988) | |
| 850-1012, gnl|tetNig1|chrUn_random (33508908-33509023) | |
| 850-1012, gnl|xenTro1|scaffold_322 (925725-925840) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) | |
| eep (0.122564) |