Ss1.1-rhyp05c_o13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGTTCACGGGGGGAGCAGCAGGGAGAACCTGGCGCTGCAGAACGTGCAGGCACGCGTGA GGATGGTCGTGGCTTACCTCTTTGCCCAGCTCAGCCTCTGGTCTCGGGGCGCTCCAGGCG GACTTCTCGTGCTCGGATCTGCCAACGTGGACGAGAGCCTCCTCGGCTACCTGACCAAGT ACGACTGCTCCAGCGCCGACATCAACCCCATAGGCGGGATCAGCAAGACCGACCTGAGAG CCTTCGTCCAGCTCTGCAGGGAGCGCTTCCAGCTGCCCGCCCTGCAGAGCATCTTGGAAG CACCGGCCACCGCCGAGCTGGAGCCCTTGGCCGATGGACAGGTGTCCCAGACCGATGAGG AGGACATGGGGGTGACGTACTCGGAGCTGTCCGTCTACGGGAGGCTCCGGAAGGTCGCCA AGACCGGGCCCTACAGCATGTTCTGCAGACTCCTGGTCCTGTGGAAGGACACCTGCAGCC CCCGGCAGGTGGCTGACAAAGTGAAGCGGTTTTTCTCGAAGTATTCCGCAAACAGACACA AAATGACCACGCTGACCCCTGCGTACCACGCTGAGAGCTACAGCCCAGACGACAACAGGT TCGATCTTCGGCCGTTTCTGTACAACACCCGCTGGCCTTGGCAGTTCCGCTGCATAGAAA ACCAGGTCCTGCAGCTGGAGCGGGGACAGCAGCAGGATCTGGACGGCGTGGACTGAGGGC GCCCCTCCCCCAAGGATGCACCTGCCACTTCGGCCTCGCTGGTGACCAGGAGCCGGAGCG GCCGGCGTCGCGGCGAGCCTTTGCTGCTGCATTTCGAGGAGAAGGGTCTTTTCAGTCCAG ATCCCTAAACAAAACTCGAAATAAAGGACGTGATTGGAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGTTCACGGGGGGAGCAGCAGGGAGAACCTGGCGCTGCAGAACGTGCAGGCACGCGTGA GGATGGTCGTGGCTTACCTCTTTGCCCAGCTCAGCCTCTGGTCTCGGGGCGCTCCAGGCG GACTTCTCGTGCTCGGATCTGCCAACGTGGACGAGAGCCTCCTCGGCTACCTGACCAAGT ACGACTGCTCCAGCGCCGACATCAACCCCATAGGCGGGATCAGCAAGACCGACCTGAGAG CCTTCGTCCAGCTCTGCAGGGAGCGCTTCCAGCTGCCCGCCCTGCAGAGCATCTTGGAAG CACCGGCCACCGCCGAGCTGGAGCCCTTGGCCGATGGACAGGTGTCCCAGACCGATGAGG AGGACATGGGGGTGACGTACTCGGAGCTGTCCGTCTACGGGAGGCTCCGGAAGGTCGCCA AGACCGGGCCCTACAGCATGTTCTGCAGACTCCTGGTCCTGTGGAAGGACACCTGCAGCC CCCGGCAGGTGGCTGACAAAGTGAAGCGGTTTTTCTCGAAGTATTCCGCAAACAGACACA AAATGACCACGCTGACCCCTGCGTACCACGCTGAGAGCTACAGCCCAGACGACAACAGGT TCGATCTTCGGCCGTTTCTGTACAACACCCGCTGGCCTTGGCAGTTCCGCTGCATAGAAA ACCAGGTCCTGCAGCTGGAGCGGGGACAGCAGCAGGATCTGGACGGCGTGGACTGAGGGC GCCCCTCCCCCAAGGATGCACCTGCCACTTCGGCCTCGCTGGTGACCAGGAGCCGGAGCG GCCGGCGTCGCGGCGAGCCTTTGCTGCTGCATTTCGAGGAGAAGGGTCTTTTCAGTCCAG ATCCCTAAACAAAACTCGAAATAAAGGACGTGATTGGAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 156-289, gnl|bosTau2|chr29 (43076654-43076787) | |
| 156-289, gnl|canFam2|chr18 (50246050-50245888) | |
| 156-289, gnl|danRer3|chr22 (33838810-33838656) | |
| 156-289, gnl|dasNov1|scaffold_142572 (1267-1432) | |
| 156-289, gnl|fr1|chrUn (318419589-318419443) | |
| 156-289, gnl|galGal2|chr5 (1802645-1802785) | |
| 156-289, gnl|hg17|chr11 (70879515-70879677) | |
| 156-289, gnl|Hg17|chr11 (70879537-70879670) | |
| 156-289, gnl|mm7|chr7 (140227230-140227066) | |
| 156-289, gnl|Mm7|chr7 (140227204-140227071) | |
| 156-289, gnl|panTro1|chr9 (72135476-72135638) | |
| 156-289, gnl|rheMac2|chr14 (3423210-3423048) | |
| 156-289, gnl|rn3|chr1 (204345136-204344972) | |
| 156-289, gnl|tetNig1|chrUn_random (32928532-32928671) | |
| 156-289, gnl|xenTro1|scaffold_76 (1090962-1091121) | |
| 486-667, gnl|bosTau2|chr29 (43078283-43078464) | |
| 486-667, gnl|canFam2|chr18 (50241608-50241419) | |
| 486-667, gnl|danRer3|chrNA (76511040-76511225) | |
| 486-667, gnl|echTel1|scaffold_265289 (4698-4515) | |
| 486-667, gnl|fr1|chrUn (318418916-318418727) | |
| 486-667, gnl|galGal2|chr5 (1804935-1805118) | |
| 486-667, gnl|hg17|chr11 (70887044-70887234) | |
| 486-667, gnl|Hg17|chr11 (70887043-70887224) | |
| 486-667, gnl|loxAfr1|scaffold_119455 (970-780) | |
| 486-667, gnl|mm7|chr7 (140225285-140225095) | |
| 486-667, gnl|Mm7|chr7 (140225284-140225103) | |
| 486-667, gnl|panTro1|chr9 (72143001-72143191) | |
| 486-667, gnl|rheMac2|chr14 (3415103-3414913) | |
| 486-667, gnl|rn3|chr1 (204343238-204343048) | |
| 486-667, gnl|tetNig1|chrUn_random (32929979-32930162) | |
| 486-667, gnl|xenTro1|scaffold_76 (1093456-1093640) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 156-289, gnl|bosTau2|chr29 (43076654-43076787) | |
| 156-289, gnl|canFam2|chr18 (50246050-50245888) | |
| 156-289, gnl|danRer3|chr22 (33838810-33838656) | |
| 156-289, gnl|dasNov1|scaffold_142572 (1267-1432) | |
| 156-289, gnl|fr1|chrUn (318419589-318419443) | |
| 156-289, gnl|galGal2|chr5 (1802645-1802785) | |
| 156-289, gnl|hg17|chr11 (70879515-70879677) | |
| 156-289, gnl|Hg17|chr11 (70879537-70879670) | |
| 156-289, gnl|mm7|chr7 (140227230-140227066) | |
| 156-289, gnl|Mm7|chr7 (140227204-140227071) | |
| 156-289, gnl|panTro1|chr9 (72135476-72135638) | |
| 156-289, gnl|rheMac2|chr14 (3423210-3423048) | |
| 156-289, gnl|rn3|chr1 (204345136-204344972) | |
| 156-289, gnl|tetNig1|chrUn_random (32928532-32928671) | |
| 156-289, gnl|xenTro1|scaffold_76 (1090962-1091121) | |
| 486-667, gnl|bosTau2|chr29 (43078283-43078464) | |
| 486-667, gnl|canFam2|chr18 (50241608-50241419) | |
| 486-667, gnl|danRer3|chrNA (76511040-76511225) | |
| 486-667, gnl|echTel1|scaffold_265289 (4698-4515) | |
| 486-667, gnl|fr1|chrUn (318418916-318418727) | |
| 486-667, gnl|galGal2|chr5 (1804935-1805118) | |
| 486-667, gnl|hg17|chr11 (70887044-70887234) | |
| 486-667, gnl|Hg17|chr11 (70887043-70887224) | |
| 486-667, gnl|loxAfr1|scaffold_119455 (970-780) | |
| 486-667, gnl|mm7|chr7 (140225285-140225095) | |
| 486-667, gnl|Mm7|chr7 (140225284-140225103) | |
| 486-667, gnl|panTro1|chr9 (72143001-72143191) | |
| 486-667, gnl|rheMac2|chr14 (3415103-3414913) | |
| 486-667, gnl|rn3|chr1 (204343238-204343048) | |
| 486-667, gnl|tetNig1|chrUn_random (32929979-32930162) | |
| 486-667, gnl|xenTro1|scaffold_76 (1093456-1093640) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| pla (0.401016) | |
| ute (0.265569) | |
| cov (0.264306) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| ute (0.265569) | |
| cov (0.264306) | |
| cli (0.152812) | |
| hyp (0.142837) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) |