Ss1.1-rhyp05c_o21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGGCTCTCGTCCTAGCTTCTCGATTTCTCATCTGGGGAGCCCGGCGGGCCTGGGACTC CCGTCCGTGCCGGTGCGGGCGCCGGCATGTGGGTGTGGGAGGAACAGGGGGGCCTCATGG GCCCGTTCTCTTTCCTGCTGCTGCTGCTCCTGCTACTGACGCGCAGTCCCTTCAATGCCT GCCTCTTCACCGGCAGTCTCTACCTCCTGCTGCGCCTCTTCAGCTTTGAGCCGGTGCCCT CCCGCAGGGCCGTTCAGGTGCTCAAGCCCCGGGACCGCGTCTCTGCCATCGCCCACCGCG GTGGCAGCTACGACGCGCCCGAGAACACGCTGGCGGCCATTCGGCAGGCAGCTAAGAATG GAGCAGCAGGCGTGGAGTTGGACATTGAGTTTACTTCCGATGGGATTCCTGTCTTGATGC ACGACAACACGGTAGATAGGACGACGGATGGCACCGGTCGATTGTGTGATTTGACCTTTG AGCAAATTCGGAAGCTTAATCCTGCAGCCAATCACAGATTAAGGAATGATTTCCCTGATG AAAAGATTCCCACCCTGAGAGAAGCGGTTGCAGAGTGCCTGCGCCATAACCTCACAGTCT TCTTTGATGTCAAGGGCCATGCAAACATGGCTACTGATGCTCTAAAGAAAATATATATGG AGTTTCCTCAACTATACAATAATAGTATTGTCTGCTCTTTCTTGCCAGAAGTTATCTATA AGATGAGACAAGCAGATCAGAATGTACTAACAGCTTTAATTCACAGACCTTGGAGTCTTA GCCATACAGGAGATGGGAAACCACGCTTTGATACTTTCTGGAAACAGTCCACGTTCGTGG CATTGGACATTTTGCTCGATTGGAGTATGCATAATATCCTGTGGTACCTGTGTGGAATTT CAGCTTTCCTCATACAGAAGGATTTTGTATCCCCGGCCTACTTGAAGAAGTGGTCTGCGA AGGGCATTCAGGTCGTTGCCTGGACTGTTAATACTTTTGATGAAAAAAGTTACTACGAGT CCCATCTCGGTTCCAGCTATATCACCGACAGCATGTTGGAAGACTGCTCACCTCAGTTCT AGACTCTTCCCCCAGGGCAGAAATGAGGTTCCAGAAACTGCCTGCAGGCGTCACAAGGGC ATCTGACACACCCTTTGGGCTGCCCACGCCCTTGGGGGATCAGGCAGCTTAACAAGCAAT ATTCGGCTCCTGGGCTTTTACCTGAACTAAAGCAAAACCCAGTGTTGCCACCGCACTCCA TGGAAAGCCTGAGTTCACACCGATGCTCTTGGAAGCCTGGGTCTGCAAAACGGCACAGCA GCTCCTGCCTCGACCTGGCTGAGGCACACACCAAGACCCAGTGAGGAAAAGCACAGACGG AGTTGTGCCATCCGGGGGTGCAGGTGCAGATGCATGGGAAATGCATGACCCTTCAGAGTT GGCATTTTTAAACCTGACACACTTCCGTCATGTACTTATTTAAAGTATTCGTATTCAGGT ACATTATCAATGTACTGTAGACATCAAACTTGTGACCATACTAATAAAATCATTAAAAGG AGCACTAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGGCTCTCGTCCTAGCTTCTCGATTTCTCATCTGGGGAGCCCGGCGGGCCTGGGACTC CCGTCCGTGCCGGTGCGGGCGCCGGCATGTGGGTGTGGGAGGAACAGGGGGGCCTCATGG GCCCGTTCTCTTTCCTGCTGCTGCTGCTCCTGCTACTGACGCGCAGTCCCTTCAATGCCT GCCTCTTCACCGGCAGTCTCTACCTCCTGCTGCGCCTCTTCAGCTTTGAGCCGGTGCCCT CCCGCAGGGCCGTTCAGGTGCTCAAGCCCCGGGACCGCGTCTCTGCCATCGCCCACCGCG GTGGCAGCTACGACGCGCCCGAGAACACGCTGGCGGCCATTCGGCAGGCAGCTAAGAATG GAGCAGCAGGCGTGGAGTTGGACATTGAGTTTACTTCCGATGGGATTCCTGTCTTGATGC ACGACAACACGGTAGATAGGACGACGGATGGCACCGGTCGATTGTGTGATTTGACCTTTG AGCAAATTCGGAAGCTTAATCCTGCAGCCAATCACAGATTAAGGAATGATTTCCCTGATG AAAAGATTCCCACCCTGAGAGAAGCGGTTGCAGAGTGCCTGCGCCATAACCTCACAGTCT TCTTTGATGTCAAGGGCCATGCAAACATGGCTACTGATGCTCTAAAGAAAATATATATGG AGTTTCCTCAACTATACAATAATAGTATTGTCTGCTCTTTCTTGCCAGAAGTTATCTATA AGATGAGACAAGCAGATCAGAATGTACTAACAGCTTTAATTCACAGACCTTGGAGTCTTA GCCATACAGGAGATGGGAAACCACGCTTTGATACTTTCTGGAAACAGTCCACGTTCGTGG CATTGGACATTTTGCTCGATTGGAGTATGCATAATATCCTGTGGTACCTGTGTGGAATTT CAGCTTTCCTCATACAGAAGGATTTTGTATCCCCGGCCTACTTGAAGAAGTGGTCTGCGA AGGGCATTCAGGTCGTTGCCTGGACTGTTAATACTTTTGATGAAAAAAGTTACTACGAGT CCCATCTCGGTTCCAGCTATATCACCGACAGCATGTTGGAAGACTGCTCACCTCAGTTCT AGACTCTTCCCCCAGGGCAGAAATGAGGTTCCAGAAACTGCCTGCAGGCGTCACAAGGGC ATCTGACACACCCTTTGGGCTGCCCACGCCCTTGGGGGATCAGGCAGCTTAACAAGCAAT ATTCGGCTCCTGGGCTTTTACCTGAACTAAAGCAAAACCCAGTGTTGCCACCGCACTCCA TGGAAAGCCTGAGTTCACACCGATGCTCTTGGAAGCCTGGGTCTGCAAAACGGCACAGCA GCTCCTGCCTCGACCTGGCTGAGGCACACACCAAGACCCAGTGAGGAAAAGCACAGACGG AGTTGTGCCATCCGGGGGTGCAGGTGCAGATGCATGGGAAATGCATGACCCTTCAGAGTT GGCATTTTTAAACCTGACACACTTCCGTCATGTACTTATTTAAAGTATTCGTATTCAGGT ACATTATCAATGTACTGTAGACATCAAACTTGTGACCATACTAATAAAATCATTAAAAGG AGCACTAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 81-200, + strand, RNAz p=0.752468 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 81-200, + strand, RNAz p=0.752468 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC012153, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-348, gnl|bosTau2|chr25 (16807489-16807142) | |
| 1-348, gnl|Hg17|chr16 (19440873-19440526) | |
| 1-348, gnl|Mm7|chr7 (114628285-114627962) | |
| 522-630, gnl|bosTau2|chr25 (16789774-16789666) | |
| 522-630, gnl|canFam2|chr6 (28780037-28779907) | |
| 522-630, gnl|danRer3|chr22 (29468811-29468934) | |
| 522-630, gnl|dasNov1|scaffold_26736 (4632-4525) | |
| 522-630, gnl|echTel1|scaffold_222229 (584-454) | |
| 522-630, gnl|fr1|chrUn (79734472-79734339) | |
| 522-630, gnl|galGal2|chr14 (10710294-10710420) | |
| 522-630, gnl|hg17|chr16 (19429658-19429786) | |
| 522-630, gnl|Hg17|chr16 (19429769-19429661) | |
| 522-630, gnl|loxAfr1|scaffold_452 (172877-172747) | |
| 522-630, gnl|mm7|chr7 (114617605-114617733) | |
| 522-630, gnl|Mm7|chr7 (114617716-114617608) | |
| 522-630, gnl|monDom2|scaffold_19 (39647415-39647546) | |
| 522-630, gnl|oryCun1|scaffold_204072 (23057-22927) | |
| 522-630, gnl|panTro1|chr18 (19892337-19892465) | |
| 522-630, gnl|rheMac2|chr20 (18482841-18482969) | |
| 522-630, gnl|tetNig1|chr18 (2260630-2260752) | |
| 522-630, gnl|xenTro1|scaffold_90 (489133-489004) | |
| 930-1575, gnl|bosTau2|chr25 (16782830-16782197) | |
| 930-1575, gnl|Hg17|chr16 (19422445-19421813) | |
| 930-1575, gnl|Mm7|chr7 (114611728-114611118) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-348, gnl|bosTau2|chr25 (16807489-16807142) | |
| 1-348, gnl|Hg17|chr16 (19440873-19440526) | |
| 1-348, gnl|Mm7|chr7 (114628285-114627962) | |
| 522-630, gnl|bosTau2|chr25 (16789774-16789666) | |
| 522-630, gnl|canFam2|chr6 (28780037-28779907) | |
| 522-630, gnl|danRer3|chr22 (29468811-29468934) | |
| 522-630, gnl|dasNov1|scaffold_26736 (4632-4525) | |
| 522-630, gnl|echTel1|scaffold_222229 (584-454) | |
| 522-630, gnl|fr1|chrUn (79734472-79734339) | |
| 522-630, gnl|galGal2|chr14 (10710294-10710420) | |
| 522-630, gnl|hg17|chr16 (19429658-19429786) | |
| 522-630, gnl|Hg17|chr16 (19429769-19429661) | |
| 522-630, gnl|loxAfr1|scaffold_452 (172877-172747) | |
| 522-630, gnl|mm7|chr7 (114617605-114617733) | |
| 522-630, gnl|Mm7|chr7 (114617716-114617608) | |
| 522-630, gnl|monDom2|scaffold_19 (39647415-39647546) | |
| 522-630, gnl|oryCun1|scaffold_204072 (23057-22927) | |
| 522-630, gnl|panTro1|chr18 (19892337-19892465) | |
| 522-630, gnl|rheMac2|chr20 (18482841-18482969) | |
| 522-630, gnl|tetNig1|chr18 (2260630-2260752) | |
| 522-630, gnl|xenTro1|scaffold_90 (489133-489004) | |
| 930-1575, gnl|bosTau2|chr25 (16782830-16782197) | |
| 930-1575, gnl|Hg17|chr16 (19422445-19421813) | |
| 930-1575, gnl|Mm7|chr7 (114611728-114611118) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| hyp (0.571347) | |
| ece (0.45861) | |
| elu (0.385356) | |
| jca (0.34188) | |
| mas (0.210305) | |
| eje (0.197668) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| cst (0.140036) | |
| pla (0.133672) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.571347) | |
| ece (0.45861) | |
| elu (0.385356) | |
| jca (0.34188) | |
| mas (0.210305) | |
| eje (0.197668) | |
| ill (0.175593) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| cst (0.140036) | |
| pla (0.133672) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |