Ss1.1-rhyp06c_g7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCGTCCGGACGCTAGCTGGCATGTCTCCTCTGCAGCGGCTGGCGCCTTTCACGCGCGT TGGAGGCCGTTTCCTCAGAGGCCGTGGCGCGGGGGTAGCTGGAGGCGGTGGAGTCCGTCA TGCTGGCGGAGGTGTGCACATCGAGCCCCGGTACAGACAGTTTCCCCAGCTGACCAGATC CCAGCTGATCCAGGCTGAGTTCTTCAGTGCAACCATGTGGTTCTGGATTCTCTGGCGCTT TTGGCACGACTCAGATGCTGTGCTGGGTCACTTTCCATATCCAGATCCTTCCCAGTGGAC GGATGAAGAATTAGGCATCCTTCCTGATGATGAGGACTGAAAATGTTGGCTCAACTTTTT ACAGGAGCCAGGTGAGGATGTCAAGAAGTCACAGACGTCACATTGTATATTAAAGCTGTA AATTAAAGTGTTTTGGTCAAGAATAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCGTCCGGACGCTAGCTGGCATGTCTCCTCTGCAGCGGCTGGCGCCTTTCACGCGCGT TGGAGGCCGTTTCCTCAGAGGCCGTGGCGCGGGGGTAGCTGGAGGCGGTGGAGTCCGTCA TGCTGGCGGAGGTGTGCACATCGAGCCCCGGTACAGACAGTTTCCCCAGCTGACCAGATC CCAGCTGATCCAGGCTGAGTTCTTCAGTGCAACCATGTGGTTCTGGATTCTCTGGCGCTT TTGGCACGACTCAGATGCTGTGCTGGGTCACTTTCCATATCCAGATCCTTCCCAGTGGAC GGATGAAGAATTAGGCATCCTTCCTGATGATGAGGACTGAAAATGTTGGCTCAACTTTTT ACAGGAGCCAGGTGAGGATGTCAAGAAGTCACAGACGTCACATTGTATATTAAAGCTGTA AATTAAAGTGTTTTGGTCAAGAATAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 11-119, gnl|bosTau2|chr27 (12066364-12066472) | |
| 11-119, gnl|canFam2|chr16 (11305575-11305302) | |
| 11-119, gnl|dasNov1|scaffold_80210 (399-671) | |
| 11-119, gnl|echTel1|scaffold_280687 (34258-34005) | |
| 11-119, gnl|hg17|chr7 (139849695-139849960) | |
| 11-119, gnl|Hg17|chr7 (139849717-139849825) | |
| 11-119, gnl|loxAfr1|scaffold_163631 (60-346) | |
| 11-119, gnl|mm7|chr6 (39522619-39522875) | |
| 11-119, gnl|Mm7|chr6 (39522632-39522736) | |
| 11-119, gnl|monDom2|scaffold_22 (1428542-1428263) | |
| 11-119, gnl|panTro1|chr6 (142609426-142609691) | |
| 11-119, gnl|rheMac2|chr3 (178184270-178184535) | |
| 11-119, gnl|rn3|chr4 (67375985-67376248) | |
| 122-266, gnl|bosTau2|chr27 (12070326-12070470) | |
| 122-266, gnl|canFam2|chr16 (11296987-11296813) | |
| 122-266, gnl|dasNov1|scaffold_269404 (1164-1021) | |
| 122-266, gnl|echTel1|scaffold_280687 (33735-33565) | |
| 122-266, gnl|fr1|chrUn (273391929-273392111) | |
| 122-266, gnl|galGal2|chr1 (53604886-53605045) | |
| 122-266, gnl|hg17|chr7 (139855841-139856015) | |
| 122-266, gnl|Hg17|chr7 (139855851-139855995) | |
| 122-266, gnl|loxAfr1|scaffold_163631 (729-906) | |
| 122-266, gnl|mm7|chr6 (39526467-39526641) | |
| 122-266, gnl|Mm7|chr6 (39526477-39526621) | |
| 122-266, gnl|monDom2|scaffold_22 (1426367-1426200) | |
| 122-266, gnl|oryCun1|scaffold_147358 (461-635) | |
| 122-266, gnl|panTro1|chr6 (142615588-142615762) | |
| 122-266, gnl|rheMac2|chr3 (178190438-178190612) | |
| 122-266, gnl|rn3|chr4 (67379807-67379981) | |
| 122-266, gnl|tetNig1|chr19 (1289060-1289220) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-119, gnl|bosTau2|chr27 (12066364-12066472) | |
| 11-119, gnl|canFam2|chr16 (11305575-11305302) | |
| 11-119, gnl|dasNov1|scaffold_80210 (399-671) | |
| 11-119, gnl|echTel1|scaffold_280687 (34258-34005) | |
| 11-119, gnl|hg17|chr7 (139849695-139849960) | |
| 11-119, gnl|Hg17|chr7 (139849717-139849825) | |
| 11-119, gnl|loxAfr1|scaffold_163631 (60-346) | |
| 11-119, gnl|mm7|chr6 (39522619-39522875) | |
| 11-119, gnl|Mm7|chr6 (39522632-39522736) | |
| 11-119, gnl|monDom2|scaffold_22 (1428542-1428263) | |
| 11-119, gnl|panTro1|chr6 (142609426-142609691) | |
| 11-119, gnl|rheMac2|chr3 (178184270-178184535) | |
| 11-119, gnl|rn3|chr4 (67375985-67376248) | |
| 122-266, gnl|bosTau2|chr27 (12070326-12070470) | |
| 122-266, gnl|canFam2|chr16 (11296987-11296813) | |
| 122-266, gnl|dasNov1|scaffold_269404 (1164-1021) | |
| 122-266, gnl|echTel1|scaffold_280687 (33735-33565) | |
| 122-266, gnl|fr1|chrUn (273391929-273392111) | |
| 122-266, gnl|galGal2|chr1 (53604886-53605045) | |
| 122-266, gnl|hg17|chr7 (139855841-139856015) | |
| 122-266, gnl|Hg17|chr7 (139855851-139855995) | |
| 122-266, gnl|loxAfr1|scaffold_163631 (729-906) | |
| 122-266, gnl|mm7|chr6 (39526467-39526641) | |
| 122-266, gnl|Mm7|chr6 (39526477-39526621) | |
| 122-266, gnl|monDom2|scaffold_22 (1426367-1426200) | |
| 122-266, gnl|oryCun1|scaffold_147358 (461-635) | |
| 122-266, gnl|panTro1|chr6 (142615588-142615762) | |
| 122-266, gnl|rheMac2|chr3 (178190438-178190612) | |
| 122-266, gnl|rn3|chr4 (67379807-67379981) | |
| 122-266, gnl|tetNig1|chr19 (1289060-1289220) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| nms (0.855432) | |
| che (0.817884) | |
| cje (0.660939) | |
| col (0.585023) | |
| cki (0.495704) | |
| nlu (0.383362) | |
| fty (0.351679) | |
| ton (0.351) | |
| fbs (0.350693) | |
| cut (0.339847) | |
| sme (0.305437) | |
| cst (0.280073) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| eru (0.240096) | |
| mas (0.210305) | |
| hea (0.204499) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| sto (0.179824) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.855432) | |
| che (0.817884) | |
| cje (0.660939) | |
| col (0.585023) | |
| cki (0.495704) | |
| nlu (0.383362) | |
| fty (0.351679) | |
| ton (0.351) | |
| fbs (0.350693) | |
| cut (0.339847) | |
| sme (0.305437) | |
| cst (0.280073) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| eru (0.240096) | |
| mas (0.210305) | |
| hea (0.204499) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| sto (0.179824) | |
| ill (0.175593) | |
| sin (0.174948) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| med (0.116252) | |
| spc (0.113366) | |
| nbm (0.0993246) | |
| eje (0.0988338) |