Non-Coding RNA Search

Ss1.1-rhyp07c_m22.5

Sequence:


               
               GATTAAGCTTAAAGTGTTCTTCCTTATAGATGTTACAATAGCACTTGTAATTAAAAAGCA
ATAACTCTTTGCATTTCTCCTTTAGAGATCCACTGGGAGGCTGGGCTGCTGAGGGGGGTG
GCGGTGGGATGGGAAGATGTAAAGAAAAGAAAGGGAGAGCAGTTCTCGGTAGGTCTGAAC
ACGCTGAGGCTGCCACAAAGACCCAGTTGGGGGGAAGGAAACAACATATCTTGGGTATCG
GGTGGGCACCCTGAGAACTGGAGAGTAGTGCTGGTGGCTCGGGGCAGGCCTTGTCTAAAA
AGGCGCAGGGTACAGAAGAGGGAGAGTAGAGAAGGCAGTCCCTATAGGTGGAAGATGGGG
GCCACATATTTGGTGGGAGGCAGGATATTGTCCCTCCTCCAGAGAGGTCCATGTCCTAAT
GCCCAGAACCAGTGGCTATGGCATCCTGCATGGCAAACGAGACTTTGCAATGTGCTTAAG
GACCATGAGATGGGGAGCTAATCTGGGATGGTCAGAGTGGGCCCAGAGTAATCAACAGGG
TCCTTAAATACTCAAAGAAGGAGGTAAAAGTGTCAGATGTCAGGTTGCTGGCTTTGAAGA
GGGAGGAAGGGCCAAGGAAATACAGGCGGCTCTGGAGGCTGCAAAGCCACAGAAACAGGA
TTCTCCCCTCAAGCCTCCCAAATGTTGAGTTTAGCTTCATGAAACCTCTTTCAGATTTCT
GACCTCCAGAACTGTAAGATAATAAATTTACATTGTTCTTCCCGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTAAGCTTAAAGTGTTCTTCCTTATAGATGTTACAATAGCACTTGTAATTAAAAAGCA
ATAACTCTTTGCATTTCTCCTTTAGAGATCCACTGGGAGGCTGGGCTGCTGAGGGGGGTG
GCGGTGGGATGGGAAGATGTAAAGAAAAGAAAGGGAGAGCAGTTCTCGGTAGGTCTGAAC
ACGCTGAGGCTGCCACAAAGACCCAGTTGGGGGGAAGGAAACAACATATCTTGGGTATCG
GGTGGGCACCCTGAGAACTGGAGAGTAGTGCTGGTGGCTCGGGGCAGGCCTTGTCTAAAA
AGGCGCAGGGTACAGAAGAGGGAGAGTAGAGAAGGCAGTCCCTATAGGTGGAAGATGGGG
GCCACATATTTGGTGGGAGGCAGGATATTGTCCCTCCTCCAGAGAGGTCCATGTCCTAAT
GCCCAGAACCAGTGGCTATGGCATCCTGCATGGCAAACGAGACTTTGCAATGTGCTTAAG
GACCATGAGATGGGGAGCTAATCTGGGATGGTCAGAGTGGGCCCAGAGTAATCAACAGGG
TCCTTAAATACTCAAAGAAGGAGGTAAAAGTGTCAGATGTCAGGTTGCTGGCTTTGAAGA
GGGAGGAAGGGCCAAGGAAATACAGGCGGCTCTGGAGGCTGCAAAGCCACAGAAACAGGA
TTCTCCCCTCAAGCCTCCCAAATGTTGAGTTTAGCTTCATGAAACCTCTTTCAGATTTCT
GACCTCCAGAACTGTAAGATAATAAATTTACATTGTTCTTCCCGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               299-404, - strand, RNAz p=0.9833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               299-404, - strand, RNAz p=0.9833

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-586, gnl|bosTau2|chr29 (20557085-20556505)
               

               
               2-586, gnl|Hg17|chr11 (124467370-124467964)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-586, gnl|bosTau2|chr29 (20557085-20556505)
               

               
               2-586, gnl|Hg17|chr11 (124467370-124467964)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	2-586, gnl\|bosTau2\|chr29 (20557085-20556505)
	2-586, gnl\|Hg17\|chr11 (124467370-124467964)