Non-Coding RNA Search

Ss1.1-rhyp08c_a18.5

Sequence:


               
               GGTCCTGCCCCCTCCCCCAGGCCCGTGGGCCCCCAGGCAGCCCCTCTCTCCATTCGAGGC
CCTCCACCTGCTGGCCAGCCCACATCCACTCCCAACCTGGTGCCTTCACCTGCCCCATCA
CCGGGGCCTGGCCCAGTACCTCCTCGGCCCCCTGCATCAGAGCCACCATCATGTCTGCGC
CGGGGTGCAGCAGCTGCAGATTTGCTTTCCTCCAGCCCCGAGAGTCAGCATGGAGGCACT
CAGCCCCCTGGGGGTGGACAGCCTCTGCTGCAGCCTACAAAGGTGGATGCAGCTGAGGGC
CGGCGGCCACAGGCCCTACGGCTGATTGAGCGGGACCCCTATGAGCACCCCGAGAGGCTA
CAGCAGTTGCAGCAGGAGTTGGAGGCCTTTCGGGGCCAGCTGGGTGATACAGGGTCTCTT
GACGCTGTATGGCGGGAGCTGCAAGAAGCACAAGAGCATGATGCCCGTGGCCGTTCCATC
GCCATTGCCCGCTGCTACTCCCTGAAGAACCGGCACCAGGACGTCATGCCCTATGACAGC
AACCGCGTGGTGCTGCGCTCGGGTAAGGACGACTACATTAACGCCAGCCGCGTGGAGGGG
CTCTCGCCGTACTGTCCGCCCTTGGTGGCCACCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCCTGCCCCCTCCCCCAGGCCCGTGGGCCCCCAGGCAGCCCCTCTCTCCATTCGAGGC
CCTCCACCTGCTGGCCAGCCCACATCCACTCCCAACCTGGTGCCTTCACCTGCCCCATCA
CCGGGGCCTGGCCCAGTACCTCCTCGGCCCCCTGCATCAGAGCCACCATCATGTCTGCGC
CGGGGTGCAGCAGCTGCAGATTTGCTTTCCTCCAGCCCCGAGAGTCAGCATGGAGGCACT
CAGCCCCCTGGGGGTGGACAGCCTCTGCTGCAGCCTACAAAGGTGGATGCAGCTGAGGGC
CGGCGGCCACAGGCCCTACGGCTGATTGAGCGGGACCCCTATGAGCACCCCGAGAGGCTA
CAGCAGTTGCAGCAGGAGTTGGAGGCCTTTCGGGGCCAGCTGGGTGATACAGGGTCTCTT
GACGCTGTATGGCGGGAGCTGCAAGAAGCACAAGAGCATGATGCCCGTGGCCGTTCCATC
GCCATTGCCCGCTGCTACTCCCTGAAGAACCGGCACCAGGACGTCATGCCCTATGACAGC
AACCGCGTGGTGCTGCGCTCGGGTAAGGACGACTACATTAACGCCAGCCGCGTGGAGGGG
CTCTCGCCGTACTGTCCGCCCTTGGTGGCCACCCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.977288
               

               
               200-439, + strand, RNAz p=0.984776

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.977288
               

               
               200-439, + strand, RNAz p=0.984776

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               330-410, + strand, RNAmicro p=0.965927

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               330-410, + strand, RNAmicro p=0.965927

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr22 (40304028-40304663)
               

               
               1-636, gnl|Hg17|chr3 (47427446-47428081)
               

               
               1-636, gnl|Mm7|chr9 (110085511-110084876)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr22 (40304028-40304663)
               

               
               1-636, gnl|Hg17|chr3 (47427446-47428081)
               

               
               1-636, gnl|Mm7|chr9 (110085511-110084876)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	40-159, - strand, RNAz p=0.977288
	200-439, + strand, RNAz p=0.984776

	1-636, gnl\|bosTau2\|chr22 (40304028-40304663)
	1-636, gnl\|Hg17\|chr3 (47427446-47428081)
	1-636, gnl\|Mm7\|chr9 (110085511-110084876)