Non-Coding RNA Search

Ss1.1-rhyp08c_g17.5

Sequence:


               
               TCTGCTCAGTGTCCTCTGTCTCTGTCCTGTGCCCACTCCCCTGGCTTAGGCAGGCAGCCA
AATCAAGCTATGTTGAAAAGAGCTCAACCAAAATTTTCAGAGAGGCTCCTTGCCTGGCCC
CAGAGCTGTCATTGCACCCCAGGCCTGCTTACCCACGGGCACTGGGAGAGACGGCAGGTC
TAAGGTGGGGTAGGTTGGAGTTGGAGCGAACAAATGTGCCTTGAGAGGCCACTCAGAGAG
GGTTCAAGGGTGAAGGGGAGGGAGGTGTGGGAGCTCAGGAAGGAGGAGGAGGGAGGCGAA
GCTGATGGGGGCCTTAGAGGGTGTGACTGTCACCTCCTGTCCCCCTGGGGCTGTGGCCAC
ATGTGGCCGGTGGTCACACTTCTGTCCTCAGGCCAGCCTGTCTGGGTTTTAGTGGGCAGG
CCACCCACTTGGCCTCTCCTGAGCTCCATCTTCTTTCAGCTTCACCTCTGAGTGGGTGAG
GGTCCATTGGGATCAACATGGGAACCCTCCATTTCACCAAAGCCTCACCCTCAGCCCTTG
GGGAGAATGAATGGCTAATCCACGGACCCCTGGCATCATTGTGAGGCTGTGGGCTGGCAG
GGGTCAAAGGGAAGAGACACCGGGGATGCAAAAGGAGACTCGAGACATCCGACGAAGTCC
CAAGCAGAGCATATTGCTTTATAGCCTGAAGCCTACTTAAACTGTGTTATGTGCAATAAC
GGAGCTTAGAGTTAAGAATTGTGTTCAAGTGCTTGGATTTCCGTCTGTATATTTAAGTGC
TGAAATCGTATCTCTCAGTAATTTTAGATGTCTTTAAAAAAACAAAAATCGAAAAACCAA
GTGTTAGACCGTGTCTGTGCATTGATGGGCACCCAAGCGTCCCGTGGGTCACCCCACCCC
TCCCTCTCCCCGTGCCCCCTCCCCTCACACCCAACCCCGCCTCCACTTGGGGACCCTGCC
TCGTGTCGTCTTTATCTGCCTATTAACTCAGCCTAAGGAAACAAGTACCCTCCACACATG
CATAAAGGAAATCAAATGTTATTTTTAAGAAAATGGAAAATAAAAACTTTATAAACACCA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGCTCAGTGTCCTCTGTCTCTGTCCTGTGCCCACTCCCCTGGCTTAGGCAGGCAGCCA
AATCAAGCTATGTTGAAAAGAGCTCAACCAAAATTTTCAGAGAGGCTCCTTGCCTGGCCC
CAGAGCTGTCATTGCACCCCAGGCCTGCTTACCCACGGGCACTGGGAGAGACGGCAGGTC
TAAGGTGGGGTAGGTTGGAGTTGGAGCGAACAAATGTGCCTTGAGAGGCCACTCAGAGAG
GGTTCAAGGGTGAAGGGGAGGGAGGTGTGGGAGCTCAGGAAGGAGGAGGAGGGAGGCGAA
GCTGATGGGGGCCTTAGAGGGTGTGACTGTCACCTCCTGTCCCCCTGGGGCTGTGGCCAC
ATGTGGCCGGTGGTCACACTTCTGTCCTCAGGCCAGCCTGTCTGGGTTTTAGTGGGCAGG
CCACCCACTTGGCCTCTCCTGAGCTCCATCTTCTTTCAGCTTCACCTCTGAGTGGGTGAG
GGTCCATTGGGATCAACATGGGAACCCTCCATTTCACCAAAGCCTCACCCTCAGCCCTTG
GGGAGAATGAATGGCTAATCCACGGACCCCTGGCATCATTGTGAGGCTGTGGGCTGGCAG
GGGTCAAAGGGAAGAGACACCGGGGATGCAAAAGGAGACTCGAGACATCCGACGAAGTCC
CAAGCAGAGCATATTGCTTTATAGCCTGAAGCCTACTTAAACTGTGTTATGTGCAATAAC
GGAGCTTAGAGTTAAGAATTGTGTTCAAGTGCTTGGATTTCCGTCTGTATATTTAAGTGC
TGAAATCGTATCTCTCAGTAATTTTAGATGTCTTTAAAAAAACAAAAATCGAAAAACCAA
GTGTTAGACCGTGTCTGTGCATTGATGGGCACCCAAGCGTCCCGTGGGTCACCCCACCCC
TCCCTCTCCCCGTGCCCCCTCCCCTCACACCCAACCCCGCCTCCACTTGGGGACCCTGCC
TCGTGTCGTCTTTATCTGCCTATTAACTCAGCCTAAGGAAACAAGTACCCTCCACACATG
CATAAAGGAAATCAAATGTTATTTTTAAGAAAATGGAAAATAAAAACTTTATAAACACCA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1080, gnl|bosTau2|chr28 (21006759-21007812)
               

               
               1-1080, gnl|Hg17|chr10 (73489816-73488798)
               

               
               1-1080, gnl|Mm7|chr10 (59652381-59653393)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1080, gnl|bosTau2|chr28 (21006759-21007812)
               

               
               1-1080, gnl|Hg17|chr10 (73489816-73488798)
               

               
               1-1080, gnl|Mm7|chr10 (59652381-59653393)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               cly (0.482567)
               

               
               ebs (0.473205)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               ece (0.229305)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.482567)
               

               
               ebs (0.473205)
               

               
               fcc (0.39557)
               

               
               fbs (0.350693)
               

               
               ece (0.229305)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	1-1080, gnl\|bosTau2\|chr28 (21006759-21007812)
	1-1080, gnl\|Hg17\|chr10 (73489816-73488798)
	1-1080, gnl\|Mm7\|chr10 (59652381-59653393)

	cly (0.482567)
	ebs (0.473205)
	fcc (0.39557)
	fbs (0.350693)
	ece (0.229305)
	cag (0.151194)
	hyp (0.142837)
	ecc (0.115035)
	eje (0.0988338)